Phables: from fragmented assemblies to high-quality bacteriophage genomes
Motivation Microbial communities have a profound impact on both human health and
various environments. Viruses infecting bacteria, known as bacteriophages or phages, play …
various environments. Viruses infecting bacteria, known as bacteriophages or phages, play …
A novel alternative algorithm to find all multiple solutions of general integer linear program
KŞ Alan - Sigma Journal of Engineering and Natural Sciences, 2024 - dergipark.org.tr
Integer linear programming (ILP) is often used to model and solve real-life problems. In
practice, alternative solutions are very useful as they significantly increase flexibility for the …
practice, alternative solutions are very useful as they significantly increase flexibility for the …
A robust optimization approach to flow decomposition
M Stinzendörfer, P Schiewe, F Oliveira - arXiv preprint arXiv:2410.21140, 2024 - arxiv.org
In this paper, we consider a variant of the so-called minimum flow decomposition (MFD)
problem in which uncertainty regarding edge capacities is taken into account from a …
problem in which uncertainty regarding edge capacities is taken into account from a …
Transcript assembly and annotations: Bias and adjustment
Transcript annotations play a critical role in gene expression analysis as they serve as a
reference for quantifying isoform-level expression. The two main sources of annotations are …
reference for quantifying isoform-level expression. The two main sources of annotations are …
A novel alternative algorithm to find all multiple solutions of general integer linear program
K Şimşek Alan - SIGMA JOURNAL OF ENGINEERING AND …, 2024 - avesis.yildiz.edu.tr
Integer linear programming (ILP) is often used to model and solve real-life problems. In
practice, alternative solutions are very useful as they significantly increase flexibility for the …
practice, alternative solutions are very useful as they significantly increase flexibility for the …