Sex chromosome evolution among amniotes: is the origin of sex chromosomes non-random?

L Kratochvíl, T Gamble… - … Transactions of the …, 2021 - royalsocietypublishing.org
Sex chromosomes are a great example of a convergent evolution at the genomic level,
having evolved dozens of times just within amniotes. An intriguing question is whether this …

Deeply conserved synteny and the evolution of metazoan chromosomes

O Simakov, J Bredeson, K Berkoff, F Marletaz… - Science …, 2022 - science.org
Animal genomes show networks of deeply conserved gene linkages whose phylogenetic
scope and chromosomal context remain unclear. Here, we report chromosome-scale …

The origin of animal body plans: a view from fossil evidence and the regulatory genome

DH Erwin - Development, 2020 - journals.biologists.com
The origins and the early evolution of multicellular animals required the exploitation of
holozoan genomic regulatory elements and the acquisition of new regulatory tools …

Emergence of novel cephalopod gene regulation and expression through large-scale genome reorganization

H Schmidbaur, A Kawaguchi, T Clarence, X Fu… - Nature …, 2022 - nature.com
Coleoid cephalopods (squid, cuttlefish, octopus) have the largest nervous system among
invertebrates that together with many lineage-specific morphological traits enables complex …

Pan-evolutionary and regulatory genome architecture delineated by an integrated macro-and microsynteny approach

H Yu, Y Li, W Han, L Bao, F Liu, Y Ma, Z Pu, Q Zeng… - Nature …, 2024 - nature.com
The forthcoming massive genome data generated by the Earth BioGenome Project will open
up a new era of comparative genomics, for which genome synteny analysis provides an …

Cephalopod biology: at the intersection between genomic and organismal novelties

CB Albertin, O Simakov - Annual review of animal biosciences, 2020 - annualreviews.org
Cephalopods are resourceful marine predators that have fascinated generations of
researchers as well as the public owing to their advanced behavior, complex nervous …

SYNPHONI: scale-free and phylogeny-aware reconstruction of synteny conservation and transformation across animal genomes

NSM Robert, F Sarigol, E Zieger, O Simakov - Bioinformatics, 2022 - academic.oup.com
Current approaches detect conserved genomic order either at chromosomal (macrosynteny)
or at subchromosomal scales (microsynteny). The latter generally requires collinearity and …

Emergence of distinct syntenic density regimes is associated with early metazoan genomic transitions

NSM Robert, F Sarigol, B Zimmermann, A Meyer… - BMC genomics, 2022 - Springer
Background Animal genomes are strikingly conserved in terms of local gene order
(microsynteny). While some of these microsyntenies have been shown to be coregulated or …

Evolution of homology: From archetype towards a holistic concept of cell type

LY Rusin - Journal of Morphology, 2023 - Wiley Online Library
The concept of homology lies in the heart of comparative biological science. The distinction
between homology as structure and analogy as function has shaped the evolutionary …

Evolutionary dynamics of gene regulation

DH Erwin - Current topics in developmental biology, 2020 - Elsevier
The long controversy over the importance of changes in the regulatory genome has been
resolved with the recognition that such changes are a fundamental component of …