SIMToolbox: a MATLAB toolbox for structured illumination fluorescence microscopy

P Křížek, T Lukeš, M Ovesný, K Fliegel… - …, 2016 - academic.oup.com
SIMToolbox is an open-source, modular set of functions for MATLAB equipped with a user-
friendly graphical interface and designed for processing two-dimensional and three …

SOFI simulation tool: a software package for simulating and testing super-resolution optical fluctuation imaging

A Girsault, T Lukes, A Sharipov, S Geissbuehler… - PLoS …, 2016 - journals.plos.org
Super-resolution optical fluctuation imaging (SOFI) allows one to perform sub-diffraction
fluorescence microscopy of living cells. By analyzing the acquired image sequence with an …

Acoustical structured illumination for super-resolution ultrasound imaging

T Ilovitsh, A Ilovitsh, J Foiret, BZ Fite… - Communications …, 2018 - nature.com
Structured illumination microscopy is an optical method to increase the spatial resolution of
wide-field fluorescence imaging beyond the diffraction limit by applying a spatially structured …

Three-dimensional super-resolution structured illumination microscopy with maximum a posteriori probability image estimation

T Lukeš, P Křížek, Z Švindrych, J Benda, M Ovesný… - Optics express, 2014 - opg.optica.org
We introduce and demonstrate a new high performance image reconstruction method for
super-resolution structured illumination microscopy based on maximum a posteriori …

Artifact-free whole-slide imaging with structured illumination microscopy and Bayesian image reconstruction

KA Johnson, GM Hagen - Gigascience, 2020 - academic.oup.com
Background Structured illumination microscopy (SIM) is a method that can be used to image
biological samples and can achieve both optical sectioning and super-resolution effects …

Super-resolution via particle swarm optimization variants

MA de Jesus, VV Estrela, O Saotome… - … computing techniques for …, 2018 - Springer
Super-resolution (SR) reconstructs a high-resolution (HR) image from a set of low-resolution
(LR) pictures and restores an HR video from a group of neighboring LR frames. Optimization …

Imaging tissues and cells beyond the diffraction limit with structured illumination microscopy and Bayesian image reconstruction

J Pospíšil, T Lukeš, J Bendesky, K Fliegel… - …, 2019 - academic.oup.com
Background Structured illumination microscopy (SIM) is a family of methods in optical
fluorescence microscopy that can achieve both optical sectioning and super-resolution …

Super-resolution imaging of neuronal structures with structured illumination microscopy

TC Paul, KA Johnson, GM Hagen - Bioengineering, 2023 - mdpi.com
Super-resolution structured illumination microscopy (SR-SIM) is an optical fluorescence
microscopy method which is suitable for imaging a wide variety of cells and tissues in …

Computational super-sectioning for single-slice structured-illumination microscopy

E Soubies, M Unser - IEEE Transactions on Computational …, 2018 - ieeexplore.ieee.org
While structured-illumination microscopy (SIM) is inherently a three-dimensional (3-D)
technique, many biological questions can be addressed from the acquisition of a single focal …

Flexible multiplane structured illumination microscope with a four-camera detector

KA Johnson, D Noble, R Machado, TC Paul… - Photonics, 2022 - mdpi.com
Fluorescence microscopy provides an unparalleled tool for imaging biological samples.
However, producing high-quality volumetric images quickly and without excessive …