The immune response during acute HIV-1 infection: clues for vaccine development

AJ McMichael, P Borrow, GD Tomaras… - Nature Reviews …, 2010 - nature.com
The early immune response to HIV-1 infection is likely to be an important factor in
determining the clinical course of disease. Recent data indicate that the HIV-1 quasispecies …

The T-cell response to HIV

B Walker, A McMichael - Cold Spring …, 2012 - perspectivesinmedicine.cshlp.org
HIV is a disease in which the original clinical observations of severe opportunistic infections
gave the first clues regarding the underlying pathology, namely that HIV is essentially an …

[HTML][HTML] Magnitude and kinetics of CD8+ T cell activation during hyperacute HIV infection impact viral set point

ZM Ndhlovu, P Kamya, N Mewalal, HN Kløverpris… - Immunity, 2015 - cell.com
CD8+ T cells contribute to the control of HIV, but it is not clear whether initial immune
responses modulate the viral set point. We screened high-risk uninfected women twice a …

Structure-guided T cell vaccine design for SARS-CoV-2 variants and sarbecoviruses

A Nathan, EJ Rossin, C Kaseke, RJ Park, A Khatri… - Cell, 2021 - cell.com
The emergence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variants
that escape convalescent and vaccine-induced antibody responses has renewed focus on …

Longitudinal HIV sequencing reveals reservoir expression leading to decay which is obscured by clonal expansion

MR Pinzone, DJ VanBelzen, S Weissman… - Nature …, 2019 - nature.com
After initiating antiretroviral therapy (ART), a rapid decline in HIV viral load is followed by a
long period of undetectable viremia. Viral outgrowth assay suggests the reservoir continues …

Whole genome deep sequencing of HIV-1 reveals the impact of early minor variants upon immune recognition during acute infection

MR Henn, CL Boutwell, P Charlebois… - PLoS …, 2012 - journals.plos.org
Deep sequencing technologies have the potential to transform the study of highly variable
viral pathogens by providing a rapid and cost-effective approach to sensitively characterize …

[HTML][HTML] Translating HIV sequences into quantitative fitness landscapes predicts viral vulnerabilities for rational immunogen design

AL Ferguson, JK Mann, S Omarjee, T Ndung'u… - Immunity, 2013 - cell.com
A prophylactic or therapeutic vaccine offers the best hope to curb the HIV-AIDS epidemic
gripping sub-Saharan Africa, but it remains elusive. A major challenge is the extreme viral …

Effects of thymic selection of the T-cell repertoire on HLA class I-associated control of HIV infection

A Košmrlj, EL Read, Y Qi, TM Allen, M Altfeld… - Nature, 2010 - nature.com
Without therapy, most people infected with human immunodeficiency virus (HIV) ultimately
progress to AIDS. Rare individuals ('elite controllers') maintain very low levels of HIV RNA …

Principles of vaccine design—lessons from nature

F Zepp - Vaccine, 2010 - Elsevier
Microbial pathogens have developed complex and efficient ways of counteracting and
evading innate and adaptive immune mechanisms. The strategies used by pathogens …

Structural topology defines protective CD8+ T cell epitopes in the HIV proteome

GD Gaiha, EJ Rossin, J Urbach, C Landeros… - Science, 2019 - science.org
Mutationally constrained epitopes of variable pathogens represent promising targets for
vaccine design but are not reliably identified by sequence conservation. In this study, we …