Alternative splicing and related RNA binding proteins in human health and disease

Y Tao, Q Zhang, H Wang, X Yang, H Mu - Signal Transduction and …, 2024 - nature.com
Alternative splicing (AS) serves as a pivotal mechanism in transcriptional regulation,
engendering transcript diversity, and modifications in protein structure and functionality …

Helix–loop–helix proteins and the advent of cellular diversity: 30 years of discovery

C Murre - Genes & development, 2019 - genesdev.cshlp.org
Abstract Helix–loop–helix (HLH) proteins are dimeric transcription factors that control
lineage-and developmental-specific gene programs. Genes encoding for HLH proteins …

A discriminative learning approach to differential expression analysis for single-cell RNA-seq

V Ntranos, L Yi, P Melsted, L Pachter - Nature methods, 2019 - nature.com
Single-cell RNA-seq makes it possible to characterize the transcriptomes of cell types across
different conditions and to identify their transcriptional signatures via differential analysis …

Genomic and transcriptomic changes complement each other in the pathogenesis of sporadic Burkitt lymphoma

C López, K Kleinheinz, SM Aukema, M Rohde… - Nature …, 2019 - nature.com
Burkitt lymphoma (BL) is the most common B-cell lymphoma in children. Within the
International Cancer Genome Consortium (ICGC), we performed whole genome and …

hnRNPH1 recruits PTBP2 and SRSF3 to modulate alternative splicing in germ cells

S Feng, J Li, H Wen, K Liu, Y Gui, Y Wen… - Nature …, 2022 - nature.com
Coordinated regulation of alternative pre-mRNA splicing is essential for germ cell
development. However, the underlying molecular mechanism that controls alternative …

Alternative splicing in angiogenesis

E Bowler, S Oltean - International journal of molecular sciences, 2019 - mdpi.com
Alternative splicing of pre-mRNA allows the generation of multiple splice isoforms from a
given gene, which can have distinct functions. In fact, splice isoforms can have opposing …

hnRNP H/F drive RNA G-quadruplex-mediated translation linked to genomic instability and therapy resistance in glioblastoma

P Herviou, M Le Bras, L Dumas, C Hieblot… - Nature …, 2020 - nature.com
Abstract RNA G-quadruplexes (RG4s) are four-stranded structures known to control mRNA
translation of cancer relevant genes. RG4 formation is pervasive in vitro but not in cellulo …

Control of noncoding RNA production and histone levels by a 5′ tRNA fragment

A Boskovic, XY Bing, E Kaymak… - Genes & …, 2020 - genesdev.cshlp.org
Small RNAs derived from mature tRNAs, referred to as tRNA fragments or “tRFs,” are an
emerging class of regulatory RNAs with poorly understood functions. We recently identified …

Post-transcriptional regulation of homeostatic, stressed, and malignant stem cells

BA Chua, I Van Der Werf, C Jamieson, RAJ Signer - Cell stem cell, 2020 - cell.com
Cellular identity is not driven by differences in genomic content but rather by epigenomic,
transcriptomic, and proteomic heterogeneity. Although regulation of the epigenome plays a …

[HTML][HTML] Crucial roles of different RNA-binding hnRNP proteins in Stem Cells

W Xie, H Zhu, M Zhao, L Wang, S Li… - … Journal of Biological …, 2021 - ncbi.nlm.nih.gov
The self-renewal, pluripotency and differentiation of stem cells are regulated by various
genetic and epigenetic factors. As a kind of RNA binding protein (RBP), the heterogeneous …