Autonomous chemical experiments: Challenges and perspectives on establishing a self-driving lab

M Seifrid, R Pollice, A Aguilar-Granda… - Accounts of Chemical …, 2022 - ACS Publications
Conspectus We must accelerate the pace at which we make technological advancements to
address climate change and disease risks worldwide. This swifter pace of discovery requires …

Mass spectrometry-based metabolomics in microbiome investigations

A Bauermeister, H Mannochio-Russo… - Nature Reviews …, 2022 - nature.com
Microbiotas are a malleable part of ecosystems, including the human ecosystem.
Microorganisms affect not only the chemistry of their specific niche, such as the human gut …

Investigating the replicability of preclinical cancer biology

TM Errington, M Mathur, CK Soderberg, A Denis… - Elife, 2021 - elifesciences.org
Replicability is an important feature of scientific research, but aspects of contemporary
research culture, such as an emphasis on novelty, can make replicability seem less …

High-confidence structural annotation of metabolites absent from spectral libraries

MA Hoffmann, LF Nothias, M Ludwig… - Nature …, 2022 - nature.com
Untargeted metabolomics experiments rely on spectral libraries for structure annotation, but,
typically, only a small fraction of spectra can be matched. Previous in silico methods search …

Metabolomics-centered mining of plant metabolic diversity and function: Past decade and future perspectives

S Shen, C Zhan, C Yang, AR Fernie, J Luo - Molecular Plant, 2023 - cell.com
Plants are natural experts in organic synthesis, being able to generate large numbers of
specific metabolites with widely varying structures that help them adapt to variable survival …

MetaboAnalyst 6.0: towards a unified platform for metabolomics data processing, analysis and interpretation

Z Pang, Y Lu, G Zhou, F Hui, L Xu, C Viau… - Nucleic Acids …, 2024 - academic.oup.com
We introduce MetaboAnalyst version 6.0 as a unified platform for processing, analyzing, and
interpreting data from targeted as well as untargeted metabolomics studies using liquid …

Systematic classification of unknown metabolites using high-resolution fragmentation mass spectra

K Dührkop, LF Nothias, M Fleischauer, R Reher… - Nature …, 2021 - nature.com
Metabolomics using nontargeted tandem mass spectrometry can detect thousands of
molecules in a biological sample. However, structural molecule annotation is limited to …

SIRIUS 4: a rapid tool for turning tandem mass spectra into metabolite structure information

K Dührkop, M Fleischauer, M Ludwig, AA Aksenov… - Nature …, 2019 - nature.com
Mass spectrometry is a predominant experimental technique in metabolomics and related
fields, but metabolite structural elucidation remains highly challenging. We report SIRIUS 4 …

Identification of bioactive metabolites using activity metabolomics

MM Rinschen, J Ivanisevic, M Giera… - Nature reviews Molecular …, 2019 - nature.com
The metabolome, the collection of small-molecule chemical entities involved in metabolism,
has traditionally been studied with the aim of identifying biomarkers in the diagnosis and …

Communicating confidence of per-and polyfluoroalkyl substance identification via high-resolution mass spectrometry

JA Charbonnet, CA McDonough, F Xiao… - … science & technology …, 2022 - ACS Publications
Per-and polyfluoroalkyl substances (PFASs) are important environmental contaminants, yet
relatively few analytical reference standards exist for this class. Nontarget analyses …