Dynamic processes in regulation and some implications for biofeedback and biobehavioral interventions

P Lehrer, D Eddie - Applied psychophysiology and biofeedback, 2013 - Springer
Abstract Systems theory has long been used in psychology, biology, and sociology. This
paper applies newer methods of control systems modeling for assessing system stability in …

Control of p53 and NF-κB signaling by WIP1 and MIF: role in cellular senescence and organismal aging

A Salminen, K Kaarniranta - Cellular signalling, 2011 - Elsevier
The stress-activated signaling pathways, p53 and NF-κB, have a major role in the regulation
of cellular senescence and organismal aging. These ancient signaling networks display …

[HTML][HTML] Beyond the Michaelis-Menten equation: Accurate and efficient estimation of enzyme kinetic parameters

B Choi, GA Rempala, JK Kim - Scientific reports, 2017 - nature.com
Examining enzyme kinetics is critical for understanding cellular systems and for using
enzymes in industry. The Michaelis-Menten equation has been widely used for over a …

[HTML][HTML] The circadian response of intrinsically photosensitive retinal ganglion cells

AJ Zele, B Feigl, SS Smith, EL Markwell - PLOS one, 2011 - journals.plos.org
Intrinsically photosensitive retinal ganglion cells (ipRGC) signal environmental light level to
the central circadian clock and contribute to the pupil light reflex. It is unknown if ipRGC …

Genome-wide inference reveals that feedback regulations constrain promoter-dependent transcriptional burst kinetics

S Luo, Z Wang, Z Zhang, T Zhou… - Nucleic Acids …, 2023 - academic.oup.com
Gene expression in mammalian cells is highly variable and episodic, resulting in a series of
discontinuous bursts of mRNAs. A challenge is to understand how static promoter …

[HTML][HTML] Live-cell imaging of circadian clock protein dynamics in CRISPR-generated knock-in cells

CH Gabriel, M Del Olmo, A Zehtabian, M Jäger… - Nature …, 2021 - nature.com
The cell biology of circadian clocks is still in its infancy. Here, we describe an efficient
strategy for generating knock-in reporter cell lines using CRISPR technology that is …

Variation in Candida albicans EFG1 Expression Enables Host-Dependent Changes in Colonizing Fungal Populations

JV Pierce, CA Kumamoto - MBio, 2012 - Am Soc Microbiol
To understand differences in host-Candida albicans interactions that occur during
colonization of healthy or compromised hosts, production of phenotypic variants and …

Experimental Observations of Group Synchrony in a System<? format?> of Chaotic Optoelectronic Oscillators

CRS Williams, TE Murphy, R Roy, F Sorrentino… - Physical review …, 2013 - APS
We experimentally demonstrate group synchrony in a network of four nonlinear
optoelectronic oscillators with time-delayed coupling. We divide the nodes into two groups of …

[HTML][HTML] Dimensional and temporal controls of three-dimensional cell migration by zyxin and binding partners

SI Fraley, Y Feng, A Giri, GD Longmore… - Nature communications, 2012 - nature.com
Spontaneous molecular oscillations are ubiquitous in biology. But to our knowledge,
periodic cell migratory patterns have not been observed. Here we report the highly regular …

ECHO: an application for detection and analysis of oscillators identifies metabolic regulation on genome-wide circadian output

H De los Santos, EJ Collins, C Mann, AW Sagan… - …, 2020 - academic.oup.com
Motivation Time courses utilizing genome scale data are a common approach to identifying
the biological pathways that are controlled by the circadian clock, an important regulator of …