Harnessing the power of RADseq for ecological and evolutionary genomics

KR Andrews, JM Good, MR Miller, G Luikart… - Nature Reviews …, 2016 - nature.com
High-throughput techniques based on restriction site-associated DNA sequencing (RADseq)
are enabling the low-cost discovery and genotyping of thousands of genetic markers for any …

Targeted capture in evolutionary and ecological genomics

MR Jones, JM Good - Molecular ecology, 2016 - Wiley Online Library
The rapid expansion of next‐generation sequencing has yielded a powerful array of tools to
address fundamental biological questions at a scale that was inconceivable just a few years …

Bioinformatic processing of RAD‐seq data dramatically impacts downstream population genetic inference

ABA Shafer, CR Peart, S Tusso… - Methods in Ecology …, 2017 - Wiley Online Library
Restriction site‐associated DNA sequencing (RAD‐seq) provides high‐resolution
population genomic data at low cost, and has become an important component in ecological …

Agouti-related peptide 2 facilitates convergent evolution of stripe patterns across cichlid fish radiations

CF Kratochwil, Y Liang, J Gerwin, JM Woltering… - Science, 2018 - science.org
The color patterns of African cichlid fishes provide notable examples of phenotypic
convergence. Across the more than 1200 East African rift lake species, melanic horizontal …

[HTML][HTML] The identification of genes involved in the evolution of color patterns in fish

U Irion, C Nüsslein-Volhard - Current Opinion in Genetics & Development, 2019 - Elsevier
The genetic basis of morphological variation, both within and between species, provides a
major topic in evolutionary biology. Teleost fish produce most elaborate color patterns, and …

Applications of next-generation sequencing in fisheries research: A review

G Kumar, M Kocour - Fisheries Research, 2017 - Elsevier
The rapid advancement and decreasing costs of next-generation sequencing (NGS)
technologies have revolutionized the field of genomics and beyond. NGS has led to …

A high-density genetic map and growth related QTL mapping in bighead carp (Hypophthalmichthys nobilis)

B Fu, H Liu, X Yu, J Tong - Scientific reports, 2016 - nature.com
Growth related traits in fish are controlled by quantitative trait loci (QTL), but no QTL for
growth have been detected in bighead carp (Hypophthalmichthys nobilis) due to the lack of …

quaddRAD: A new high‐multiplexing and PCR duplicate removal ddRAD protocol produces novel evolutionary insights in a nonradiating cichlid lineage

P Franchini, D Monné Parera, AF Kautt… - Molecular …, 2017 - Wiley Online Library
The identification of thousands of variants across the genomes and their accurate
genotyping are crucial for estimating the genetic parameters needed to address a host of …

The mechanistic, genetic and evolutionary causes of bird eye colour variation

EC Corbett, RT Brumfield, BC Faircloth - Ibis, 2024 - Wiley Online Library
Birds display a rainbow of eye colours, but this trait has been little studied compared with
plumage coloration. Avian eye colour variation occurs at all phylogenetic scales: it can be …

Closing the genotype–phenotype gap: emerging technologies for evolutionary genetics in ecological model vertebrate systems

CF Kratochwil, A Meyer - BioEssays, 2015 - Wiley Online Library
The analysis of genetic and epigenetic mechanisms of the genotype–phenotypic connection
has, so far, only been possible in a handful of genetic model systems. Recent technological …