The rise of regulatory RNA

KV Morris, JS Mattick - Nature Reviews Genetics, 2014 - nature.com
Discoveries over the past decade portend a paradigm shift in molecular biology. Evidence
suggests that RNA is not only functional as a messenger between DNA and protein but also …

Emerging roles of tRNA in adaptive translation, signalling dynamics and disease

S Kirchner, Z Ignatova - Nature Reviews Genetics, 2015 - nature.com
Abstract tRNAs, nexus molecules between mRNAs and proteins, have a central role in
translation. Recent discoveries have revealed unprecedented complexity of tRNA …

Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq

D Dominissini, S Moshitch-Moshkovitz, S Schwartz… - Nature, 2012 - nature.com
An extensive repertoire of modifications is known to underlie the versatile coding, structural
and catalytic functions of RNA, but it remains largely uncharted territory. Although …

MODOMICS: a database of RNA modification pathways—2013 update

MA Machnicka, K Milanowska… - Nucleic acids …, 2012 - academic.oup.com
MODOMICS is a database of RNA modifications that provides comprehensive information
concerning the chemical structures of modified ribonucleosides, their biosynthetic pathways …

Transcriptome-wide mapping of N6-methyladenosine by m6A-seq based on immunocapturing and massively parallel sequencing

D Dominissini, S Moshitch-Moshkovitz… - Nature protocols, 2013 - nature.com
Abstract N 6-methyladenosine–sequencing (m6A-seq) is an immunocapturing approach for
the unbiased transcriptome-wide localization of m6A in high resolution. To our knowledge …

The RNA modification database, RNAMDB: 2011 update

WA Cantara, PF Crain, J Rozenski… - Nucleic acids …, 2010 - academic.oup.com
Since its inception in 1994, The RNA Modification Database (RNAMDB, http://rna-mdb. cas.
albany. edu/RNAmods/) has served as a focal point for information pertaining to naturally …

N6-Methyl-Adenosine (m6A) in RNA: An Old Modification with A Novel Epigenetic Function

Y Niu, X Zhao, YS Wu, MM Li, XJ Wang… - Genomics, proteomics …, 2013 - academic.oup.com
Abstract N6-methyl-adenosine (m6A) is one of the most common and abundant
modifications on RNA molecules present in eukaryotes. However, the biological significance …

Biosynthesis and function of posttranscriptional modifications of transfer RNAs

B El Yacoubi, M Bailly… - Annual review of …, 2012 - annualreviews.org
Posttranscriptional modifications of transfer RNAs (tRNAs) are critical for all core aspects of
tRNA function, such as folding, stability, and decoding. Most tRNA modifications were …

Human mitochondrial tRNAs: biogenesis, function, structural aspects, and diseases

T Suzuki, A Nagao, T Suzuki - Annual review of genetics, 2011 - annualreviews.org
Mitochondria are eukaryotic organelles that generate most of the energy in the cell by
oxidative phosphorylation (OXPHOS). Each mitochondrion contains multiple copies of a …

BRENDA in 2013: integrated reactions, kinetic data, enzyme function data, improved disease classification: new options and contents in BRENDA

I Schomburg, A Chang, S Placzek… - Nucleic acids …, 2012 - academic.oup.com
Abstract The BRENDA (BRaunschweig ENzyme DAtabase) enzyme portal (http://www.
brenda-enzymes. org) is the main information system of functional biochemical and …