Whole genome sequencing for the risk assessment of probiotic lactic acid bacteria
X Peng, A Ed-Dra, M Yue - Critical Reviews in Food Science and …, 2023 - Taylor & Francis
Probiotic bacteria exhibit beneficial effects on human and/or animal health, and have been
widely used in foods and fermented products for decades. Most probiotics consist of lactic …
widely used in foods and fermented products for decades. Most probiotics consist of lactic …
Microbial genomic island discovery, visualization and analysis
C Bertelli, KE Tilley, FSL Brinkman - Briefings in bioinformatics, 2019 - academic.oup.com
Horizontal gene transfer (also called lateral gene transfer) is a major mechanism for
microbial genome evolution, enabling rapid adaptation and survival in specific niches …
microbial genome evolution, enabling rapid adaptation and survival in specific niches …
[HTML][HTML] Host genetic regulation of human gut microbial structural variation
Although the impact of host genetics on gut microbial diversity and the abundance of specific
taxa is well established,,,,–, little is known about how host genetics regulates the genetic …
taxa is well established,,,,–, little is known about how host genetics regulates the genetic …
Metagenome-assembled genome binning methods with short reads disproportionately fail for plasmids and genomic islands
Metagenomic methods enable the simultaneous characterization of microbial communities
without time-consuming and bias-inducing culturing. Metagenome-assembled genome …
without time-consuming and bias-inducing culturing. Metagenome-assembled genome …
Symbiotic bacteria confer insecticide resistance by metabolizing buprofezin in the brown planthopper, Nilaparvata lugens (Stål)
Buprofezin, a chitin synthesis inhibitor, is widely used to control several economically
important insect crop pests. However, the overuse of buprofezin has led to the evolution of …
important insect crop pests. However, the overuse of buprofezin has led to the evolution of …
Enabling genomic island prediction and comparison in multiple genomes to investigate bacterial evolution and outbreaks
C Bertelli, KL Gray, N Woods, AC Lim… - Microbial …, 2022 - microbiologyresearch.org
Outbreaks of virulent and/or drug-resistant bacteria have a significant impact on human
health and major economic consequences. Genomic islands (GIs; defined as clusters of …
health and major economic consequences. Genomic islands (GIs; defined as clusters of …
Isolation, identification, and whole-genome sequencing of high-yield protease bacteria from Daqu of ZhangGong Laojiu
Y Liu, J Fu, L Wang, Z Zhao, H Wang, S Han, X Sun… - PLoS …, 2022 - journals.plos.org
A total of 296 strains of protease-producing bacteria were isolated and purified from medium-
temperature Daqu produced by ZhangGong LaoJiu Wine Co. Ltd. After calculating the ratio …
temperature Daqu produced by ZhangGong LaoJiu Wine Co. Ltd. After calculating the ratio …
Genomic characterisation of an international Pseudomonas aeruginosa reference panel indicates that the two major groups draw upon distinct mobile gene pools
Pseudomonas aeruginosa is an important opportunistic pathogen, especially in the context
of infections of cystic fibrosis (CF). In order to facilitate coordinated study of this pathogen, an …
of infections of cystic fibrosis (CF). In order to facilitate coordinated study of this pathogen, an …
The man, the plant, and the insect: shooting host specificity determinants in Serratia marcescens pangenome
AE Shikov, AV Merkushova, IA Savina… - Frontiers in …, 2023 - frontiersin.org
Introduction Serratia marcescens is most commonly known as an opportunistic pathogen
causing nosocomial infections. It, however, was shown to infect a wide range of hosts apart …
causing nosocomial infections. It, however, was shown to infect a wide range of hosts apart …
Detailed genomic and biochemical characterization and plant growth promoting properties of an arsenic-tolerant isolate of Bacillus pacificus from contaminated …
In this study, arsenic tolerating bacteria Bacillus pacificus (AKS1a) was isolated from arsenic
contaminated groundwater of Purbasthali, Purba Bardhaman, West Bengal, India and its …
contaminated groundwater of Purbasthali, Purba Bardhaman, West Bengal, India and its …