Physics of viral dynamics

RF Bruinsma, GJL Wuite, WH Roos - Nature Reviews Physics, 2021 - nature.com
Viral capsids are often regarded as inert structural units, but in actuality they display
fascinating dynamics during different stages of their life cycle. With the advent of single …

Physical principles in the self-assembly of a simple spherical virus

RF Garmann, M Comas-Garcia… - Accounts of chemical …, 2016 - ACS Publications
Conspectus Viruses are unique among living organisms insofar as they can be reconstituted
“from scratch”, that is, synthesized from purified components. In the simplest cases, their …

Theoretical basis for stabilizing messenger RNA through secondary structure design

HK Wayment-Steele, DS Kim, CA Choe… - Nucleic acids …, 2021 - academic.oup.com
RNA hydrolysis presents problems in manufacturing, long-term storage, world-wide delivery
and in vivo stability of messenger RNA (mRNA)-based vaccines and therapeutics. A largely …

[HTML][HTML] A modelling paradigm for RNA virus assembly

R Twarock, RJ Bingham, EC Dykeman… - Current opinion in …, 2018 - Elsevier
Highlights•Multiple, common dispersed packaging signals (PSs) promote RNA virus
assembly.•PS-mediated assembly solves a viral equivalent of Levinthal's Paradox.•RNA PSs …

RNA-mediated virus assembly: mechanisms and consequences for viral evolution and therapy

R Twarock, PG Stockley - Annual Review of Biophysics, 2019 - annualreviews.org
Viruses, entities composed of nucleic acids, proteins, and in some cases lipids lack the
ability to replicate outside their target cells. Their components self-assemble at the …

Sizes of long RNA molecules are determined by the branching patterns of their secondary structures

A Borodavka, SW Singaram, PG Stockley, WM Gelbart… - Biophysical journal, 2016 - cell.com
Long RNA molecules are at the core of gene regulation across all kingdoms of life, while
also serving as genomes in RNA viruses. Few studies have addressed the basic physical …

Advances, Applications, and Perspectives in Small‐Angle X‐ray Scattering of RNA

JN Tants, A Schlundt - Chembiochem, 2023 - Wiley Online Library
RNAs exhibit a plethora of functions far beyond transmitting genetic information. Often, RNA
functions are entailed in their structure, be it as a regulatory switch, protein binding site, or …

[HTML][HTML] Condensation goes viral: a polymer physics perspective

JJ Alston, A Soranno - Journal of molecular biology, 2023 - Elsevier
The past decade has seen a revolution in our understanding of how the cellular environment
is organized, where an incredible body of work has provided new insights into the role …

Visualizing the global secondary structure of a viral RNA genome with cryo-electron microscopy

RF Garmann, A Gopal, SS Athavale, CM Knobler… - Rna, 2015 - rnajournal.cshlp.org
The lifecycle, and therefore the virulence, of single-stranded (ss)-RNA viruses is regulated
not only by their particular protein gene products, but also by the secondary and tertiary …

Rhinovirus inhibitors: Including a new target, the viral RNA

A Real-Hohn, D Blaas - Viruses, 2021 - mdpi.com
Rhinoviruses (RVs) are the main cause of recurrent infections with rather mild symptoms
characteristic of the common cold. Nevertheless, RVs give rise to enormous numbers of …