Chemical complementarity between tumor resident, T-cell receptor CDR3s and MAGEA3/6 correlates with increased melanoma survival: Potential relevance to MAGE …

RA Eakins, A Chobrutskiy, JK Teer, DN Patel… - Molecular …, 2022 - Elsevier
Cancer testis antigens have been of interest as possible targets for cancer
immunotherapies. To better understand the opportunities for the use of such immunotherapy …

Immunogenomics parameters for patient stratification in Alzheimer's disease

TI Huda, MJ Diaz, EC Gozlan… - Journal of …, 2022 - content.iospress.com
Background: Despite the fact that only modest adaptive immune system related approaches
to treating Alzheimer's disease (AD) are available, an immunogenomics approach to the …

IGL CDR3 Hydropathy and antigen chemical complementarity associated with greater disease-free survival in lung adenocarcinoma: implications for gender …

SV Charkowick, TI Huda, DN Patel, M Yeagley… - Biochemical …, 2024 - Springer
With lung cancer remaining a challenging disease, new approaches to biomarker discovery
and therapy development are needed. Recent immunogenomics, adaptive immune receptor …

Quantification of T-and B-cell immune receptor distribution diversity characterizes immune cell infiltration and lymphocyte heterogeneity in clear cell renal cell …

MC Ferrall-Fairbanks, NH Chakiryan, BI Chobrutskiy… - Cancer research, 2022 - AACR
Immune-modulating systemic therapies are often used to treat advanced cancer such as
metastatic clear cell renal cell carcinoma (ccRCC). Used alone, sequence-based …

Tumor resident, TRA anti-viral CDR3 chemical sequence motifs are associated with a better breast cancer outcome

MJ Diaz, DB Kacsoh, DN Patel, M Yeagley… - Genes & …, 2023 - nature.com
While for certain cancers, such as cervical cancer, the link to viral infections is very strong
and very clear, other cancers represent a history of links to viral infections that are either co …

[HTML][HTML] Chemical complementarity of tumor resident, T-cell receptor CDR3s and renalase-1 correlates with increased melanoma survival

S Zaman, FS Gorelick, A Chrobrutskiy… - …, 2024 - pmc.ncbi.nlm.nih.gov
Overexpression of the secretory protein renalase-1 negatively impacts the survival of
melanoma and pancreatic cancer patients, while inhibition of renalase-1 signaling drives …

TRB CDR3 chemical complementarity with HBV epitopes correlates with increased hepatocellular carcinoma, disease‐free survival

JJ Song, A Chobrutskiy, BI Chobrutskiy… - Journal of Medical …, 2023 - Wiley Online Library
The liver is a site of immune privilege, compared with the bladder and skin, for example. To
study this attenuation of the immune response in the cancer setting, we compared quantities …

Chemical Complementarity of Tumor Resident, Adaptive Immune Receptor CDR3s and Previously Defined Hepatitis C Virus Epitopes Correlates with Improved …

JJ Song, A Chobrutskiy, BI Chobrutskiy, KJ Cios… - Viral …, 2023 - liebertpub.com
To better understand how adaptive immune receptors (IRs) in hepatocellular carcinoma
(HCC) microenvironments are related to disease outcomes, we employed a chemical …

Neuroblastoma and Glioblastoma Cases With Amplified Oncogenes Have Reduced Numbers of Tumor-Resident Adaptive Immune Receptor Recombinations

TR Dabkowski, M Varkhedi, JJ Song… - JCO Precision …, 2023 - ascopubs.org
PURPOSE In certain cancers, oncogene amplification is correlated with an immunologically
cold or noninflamed, tumor immune microenvironment (TIME) and a worse prognosis, for …

Worse Wilms' Tumor Outcomes Associated With Chemical Complementarity for Multiple T-Cell Receptor CDR3-CMV Epitope Pairs

KL Rigby, MJ Diaz, EC Gozlan… - Cancer Genomics & …, 2024 - cgp.iiarjournals.org
Background/Aim: Wilms' tumors are pediatric renal tumors that generally have a good
prognosis and outcomes. Viral illnesses have been linked to development of neoplasms and …