Biased gene conversion and the evolution of mammalian genomic landscapes

L Duret, N Galtier - Annual review of genomics and human …, 2009 - annualreviews.org
Recombination is typically thought of as a symmetrical process resulting in large-scale
reciprocal genetic exchanges between homologous chromosomes. Recombination events …

In plants, highly expressed genes are the least compact

XY Ren, O Vorst, MWEJ Fiers, WJ Stiekema, JP Nap - Trends in genetics, 2006 - cell.com
In both the monocot rice and the dicot Arabidopsis, highly expressed genes have more and
longer introns and a larger primary transcript than genes expressed at a low level: higher …

The impact of recombination on nucleotide substitutions in the human genome

L Duret, PF Arndt - PLoS genetics, 2008 - journals.plos.org
Unraveling the evolutionary forces responsible for variations of neutral substitution patterns
among taxa or along genomes is a major issue for detecting selection within sequences …

Origin of minicircular mitochondrial genomes in red algae

Y Lee, CH Cho, C Noh, JH Yang, SI Park… - Nature …, 2023 - nature.com
Eukaryotic organelle genomes are generally of conserved size and gene content within
phylogenetic groups. However, significant variation in genome structure may occur. Here …

Origins and evolution of spliceosomal introns

F Rodríguez-Trelles, R Tarrío, FJ Ayala - Annu. Rev. Genet., 2006 - annualreviews.org
Research into the origins of introns is at a critical juncture in the resolution of theories on the
evolution of early life (which came first, RNA or DNA?), the identity of LUCA (the last …

Evolution of complex genome architecture in gymnosperms

T Wan, Y Gong, Z Liu, YD Zhou, C Dai, Q Wang - GigaScience, 2022 - academic.oup.com
Gymnosperms represent an ancient lineage that diverged from early spermatophytes during
the Devonian. The long fossil records and low diversity in living species prove their complex …

Chromatin organization in sperm may be the major functional consequence of base composition variation in the human genome

T Vavouri, B Lehner - PLoS genetics, 2011 - journals.plos.org
Chromatin in sperm is different from that in other cells, with most of the genome packaged by
protamines not nucleosomes. Nucleosomes are, however, retained at some genomic sites …

The evolution of intron size in amniotes: a role for powered flight?

Q Zhang, SV Edwards - Genome biology and evolution, 2012 - academic.oup.com
Intronic DNA is a major component of eukaryotic genes and genomes and can be subject to
selective constraint and have functions in gene regulation. Intron size is of particular interest …

Mice and men: their promoter properties

VB Bajic, SL Tan, A Christoffels, C Schönbach… - PLoS …, 2006 - journals.plos.org
Using the two largest collections of Mus musculus and Homo sapiens transcription start sites
(TSSs) determined based on CAGE tags, ditags, full-length cDNAs, and other transcript data …

Tandemly repeated DNA families in the mouse genome

AS Komissarov, EV Gavrilova, SJ Demin, AM Ishov… - BMC genomics, 2011 - Springer
Background Functional and morphological studies of tandem DNA repeats, that combine
high portion of most genomes, are mostly limited due to the incomplete characterization of …