[HTML][HTML] Predicting antigen presentation—what could we learn from a million peptides?
D Gfeller, M Bassani-Sternberg - Frontiers in immunology, 2018 - frontiersin.org
Antigen presentation lies at the heart of immune recognition of infected or malignant cells.
For this reason, important efforts have been made to predict which peptides are more likely …
For this reason, important efforts have been made to predict which peptides are more likely …
Current tools for predicting cancer-specific T cell immunity
D Gfeller, M Bassani-Sternberg, J Schmidt… - …, 2016 - Taylor & Francis
Tumor exome and RNA sequencing data provide a systematic and unbiased view on cancer-
specific expression, over-expression, and mutations of genes, which can be mined for …
specific expression, over-expression, and mutations of genes, which can be mined for …
[HTML][HTML] The interplay between citrullination and HLA-DRB1 polymorphism in shaping peptide binding hierarchies in rheumatoid arthritis
The HLA-DRB1 locus is strongly associated with rheumatoid arthritis (RA) susceptibility,
whereupon citrullinated self-peptides bind to HLA-DR molecules bearing the shared epitope …
whereupon citrullinated self-peptides bind to HLA-DR molecules bearing the shared epitope …
[HTML][HTML] Pleiotropic consequences of metabolic stress for the major histocompatibility complex class II molecule antigen processing and presentation machinery
Hyperglycemia and hyperlipidemia are often observed in individuals with type II diabetes
(T2D) and related mouse models. One dysmetabolic biochemical consequence is the non …
(T2D) and related mouse models. One dysmetabolic biochemical consequence is the non …
[HTML][HTML] Repertoire-scale determination of class II MHC peptide binding via yeast display improves antigen prediction
CD4+ helper T cells contribute important functions to the immune response during pathogen
infection and tumor formation by recognizing antigenic peptides presented by class II major …
infection and tumor formation by recognizing antigenic peptides presented by class II major …
[HTML][HTML] Broadly recognized, cross-reactive SARS-CoV-2 CD4 T cell epitopes are highly conserved across human coronaviruses and presented by common HLA …
A Becerra-Artiles, JM Calvo-Calle, PP Nanaware… - Cell Reports, 2022 - cell.com
Sequence homology between SARS-CoV-2 and common-cold human coronaviruses
(HCoVs) raises the possibility that memory responses to prior HCoV infection can affect T …
(HCoVs) raises the possibility that memory responses to prior HCoV infection can affect T …
A high-throughput yeast display approach to profile pathogen proteomes for MHC-II binding
BD Huisman, Z Dai, DK Gifford, ME Birnbaum - Elife, 2022 - elifesciences.org
T cells play a critical role in the adaptive immune response, recognizing peptide antigens
presented on the cell surface by major histocompatibility complex (MHC) proteins. While …
presented on the cell surface by major histocompatibility complex (MHC) proteins. While …
High-resolution profiling of MHC II peptide presentation capacity reveals SARS-CoV-2 CD4 T cell targets and mechanisms of immune escape
FJ Obermair, F Renoux, S Heer, CH Lee… - Science …, 2022 - science.org
Understanding peptide presentation by specific MHC alleles is fundamental for controlling
physiological functions of T cells and harnessing them for therapeutic use. However …
physiological functions of T cells and harnessing them for therapeutic use. However …
[HTML][HTML] Immunopeptidome profiling of human coronavirus OC43-infected cells identifies CD4 T-cell epitopes specific to seasonal coronaviruses or cross-reactive with …
A Becerra-Artiles, PP Nanaware, K Muneeruddin… - PLoS …, 2023 - journals.plos.org
Seasonal “common-cold” human coronaviruses are widely spread throughout the world and
are mainly associated with mild upper respiratory tract infections. The emergence of highly …
are mainly associated with mild upper respiratory tract infections. The emergence of highly …
[HTML][HTML] Quantitative affinity measurement of small molecule ligand binding to major histocompatibility complex class-I–related protein 1 MR1
The Major Histocompatibility Complex class I–related protein 1 (MR1) presents small
molecule metabolites, drugs, and drug-like molecules that are recognized by MR1-reactive T …
molecule metabolites, drugs, and drug-like molecules that are recognized by MR1-reactive T …