[HTML][HTML] Microbiome in cancer: Role in carcinogenesis and impact in therapeutic strategies
Cancer is the world's second-leading cause of death, and the involvement of microbes in a
range of diseases, including cancer, is well established. The gut microbiota is known to play …
range of diseases, including cancer, is well established. The gut microbiota is known to play …
Promises and pitfalls of using high‐throughput sequencing for diet analysis
The application of high‐throughput sequencing‐based approaches to DNA extracted from
environmental samples such as gut contents and faeces has become a popular tool for …
environmental samples such as gut contents and faeces has become a popular tool for …
Improved metagenome binning and assembly using deep variational autoencoders
Despite recent advances in metagenomic binning, reconstruction of microbial species from
metagenomics data remains challenging. Here we develop variational autoencoders for …
metagenomics data remains challenging. Here we develop variational autoencoders for …
Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage
Antimicrobial resistance (AMR) is a serious threat to global public health, but obtaining
representative data on AMR for healthy human populations is difficult. Here, we use …
representative data on AMR for healthy human populations is difficult. Here, we use …
Rapid and precise alignment of raw reads against redundant databases with KMA
Background As the cost of sequencing has declined, clinical diagnostics based on next
generation sequencing (NGS) have become reality. Diagnostics based on sequencing will …
generation sequencing (NGS) have become reality. Diagnostics based on sequencing will …
[HTML][HTML] A bat MERS-like coronavirus circulates in pangolins and utilizes human DPP4 and host proteases for cell entry
It is unknown whether pangolins, the most trafficked mammals, play a role in the zoonotic
transmission of bat coronaviruses. We report the circulation of a novel MERS-like …
transmission of bat coronaviruses. We report the circulation of a novel MERS-like …
Co-diversification of an intestinal Mycoplasma and its salmonid host
JA Rasmussen, P Kiilerich, AS Madhun… - The ISME …, 2023 - academic.oup.com
Understanding the evolutionary relationships between a host and its intestinal resident
bacteria can transform how we understand adaptive phenotypic traits. The interplay between …
bacteria can transform how we understand adaptive phenotypic traits. The interplay between …
The microbiome and cancer
B Goodman, H Gardner - The Journal of pathology, 2018 - Wiley Online Library
Humans coexist with a vast bacterial, fungal and viral microbiome with which we have
coevolved for millions of years. Several long recognized epidemiological associations …
coevolved for millions of years. Several long recognized epidemiological associations …
Bioinformatic approaches for studying the microbiome of fermented food
LH Walsh, M Coakley, AM Walsh… - Critical Reviews in …, 2023 - Taylor & Francis
High-throughput DNA sequencing-based approaches continue to revolutionise our
understanding of microbial ecosystems, including those associated with fermented foods …
understanding of microbial ecosystems, including those associated with fermented foods …
[HTML][HTML] Platforms for elucidating antibiotic resistance in single genomes and complex metagenomes
Antibiotic or antimicrobial resistance (AR) facilitated by the vertical and/or horizontal transfer
of antibiotic resistance genes (ARGs), is a serious global health challenge. While …
of antibiotic resistance genes (ARGs), is a serious global health challenge. While …