Computational modeling of realistic cell membranes

SJ Marrink, V Corradi, PCT Souza, HI Ingolfsson… - Chemical …, 2019 - ACS Publications
Cell membranes contain a large variety of lipid types and are crowded with proteins,
endowing them with the plasticity needed to fulfill their key roles in cell functioning. The …

Characterization of lipid–protein interactions and lipid-mediated modulation of membrane protein function through molecular simulation

MP Muller, T Jiang, C Sun, M Lihan, S Pant… - Chemical …, 2019 - ACS Publications
The cellular membrane constitutes one of the most fundamental compartments of a living
cell, where key processes such as selective transport of material and exchange of …

[HTML][HTML] Structural mechanism for cargo recognition by the retromer complex

M Lucas, DC Gershlick, A Vidaurrazaga, AL Rojas… - Cell, 2016 - cell.com
Retromer is a multi-protein complex that recycles transmembrane cargo from endosomes to
the trans-Golgi network and the plasma membrane. Defects in retromer impair various …

Lipid kinases VPS34 and PIKfyve coordinate a phosphoinositide cascade to regulate retriever-mediated recycling on endosomes

SSP Giridharan, G Luo, P Rivero-Rios, N Steinfeld… - Elife, 2022 - elifesciences.org
Cell surface receptors control how cells respond to their environment. Many cell surface
receptors recycle from endosomes to the plasma membrane via a recently discovered …

Attracted to membranes: lipid-binding domains in plants

F de Jong, T Munnik - Plant Physiology, 2021 - academic.oup.com
Membranes are essential for cells and organelles to function. As membranes are
impermeable to most polar and charged molecules, they provide electrochemical energy to …

Class III PI3K positively regulates platelet activation and thrombosis via PI (3) P-directed function of NADPH oxidase

Y Liu, M Hu, D Luo, M Yue, S Wang… - … , and vascular biology, 2017 - Am Heart Assoc
Objective—Class III phosphoinositide 3-kinase, also known as VPS34 (vacuolar protein
sorting 34), is a highly conserved enzyme regulating important cellular functions such as …

Association of NOX2 subunits genetic variants with autoimmune diseases

J Zhong, LM Olsson, V Urbonaviciute, M Yang… - Free Radical Biology …, 2018 - Elsevier
A single nucleotide polymorphism in Ncf1 has been found with a major effect on chronic
inflammatory autoimmune diseases in the rat with the surprising observation that a lower …

Study of Legionella Effector Domains Revealed Novel and Prevalent Phosphatidylinositol 3-Phosphate Binding Domains

N Nachmias, T Zusman, G Segal - Infection and Immunity, 2019 - Am Soc Microbiol
Legionella pneumophila and other Legionella species replicate intracellularly using the
Icm/Dot type IV secretion system. In L. pneumophila this system translocates> 300 effectors …

Sorting nexin 17 (SNX17) links endosomal sorting to Eps15 homology domain protein 1 (EHD1)–mediated fission machinery

K Dhawan, N Naslavsky, S Caplan - Journal of Biological Chemistry, 2020 - ASBMB
Following endocytosis, receptors that are internalized to sorting endosomes are sorted to
different pathways, in part by sorting nexin (SNX) proteins. Notably, SNX17 interacts with a …

[PDF][PDF] The PDLIM family of actin-associated proteins and their emerging role in membrane trafficking

MD Healy, BM Collins - Biochemical Society Transactions, 2023 - portlandpress.com
The PDZ and LIM domain (PDLIM) proteins are associated with the actin cytoskeleton and
have conserved in roles in metazoan actin organisation and function. They primarily function …