Museum specimens: An overlooked and valuable material for conservation genetics
N Nakahama - Ecological Research, 2021 - Wiley Online Library
Museum specimens include genetic information from when they were collected. This
historical information, which is very difficult to ascertain from samples collected currently …
historical information, which is very difficult to ascertain from samples collected currently …
Understanding UCEs: a comprehensive primer on using ultraconserved elements for arthropod phylogenomics
Targeted enrichment of ultraconserved elements (UCEs) has emerged as a promising tool
for inferring evolutionary history in many taxa, with utility ranging from phylogenetic and …
for inferring evolutionary history in many taxa, with utility ranging from phylogenetic and …
Protein‐encoding ultraconserved elements provide a new phylogenomic perspective of Oestroidea flies (Diptera: Calyptratae)
E Buenaventura, MW Lloyd… - Systematic …, 2021 - Wiley Online Library
The diverse superfamily Oestroidea with more than 15 000 known species includes among
others blow flies, flesh flies, bot flies and the diverse tachinid flies. Oestroidea exhibit …
others blow flies, flesh flies, bot flies and the diverse tachinid flies. Oestroidea exhibit …
A novel probe set for the phylogenomics and evolution of RTA spiders
J Zhang, Z Li, J Lai, Z Zhang, F Zhang - Cladistics, 2023 - Wiley Online Library
Spiders are important models for evolutionary studies of web building, sexual selection and
adaptive radiation. The recent development of probes for UCE (ultra‐conserved element) …
adaptive radiation. The recent development of probes for UCE (ultra‐conserved element) …
Larger, unfiltered datasets are more effective at resolving phylogenetic conflict: Introns, exons, and UCEs resolve ambiguities in Golden-backed frogs (Anura: Ranidae …
Using FrogCap, a recently-developed sequence-capture protocol, we obtained> 12,000
highly informative exons, introns, and ultraconserved elements (UCEs), which we used to …
highly informative exons, introns, and ultraconserved elements (UCEs), which we used to …
Phylogenomics and systematics of Entomobryoidea (Collembola): marker design, phylogeny and classification
NN Godeiro, Y Ding, NG Cipola, S Jantarit… - …, 2023 - Wiley Online Library
Entomobryoidea has been the focus of phylogenetic studies in recent years owing to a
divergence between morphological and genetic data. Recent phylogenies have converged …
divergence between morphological and genetic data. Recent phylogenies have converged …
Gene Tree Estimation Error with Ultraconserved Elements: An Empirical Study on Pseudapis Bees
Summarizing individual gene trees to species phylogenies using two-step coalescent
methods is now a standard strategy in the field of phylogenomics. However, practical …
methods is now a standard strategy in the field of phylogenomics. However, practical …
Insight from an ultraconserved element bait set designed for hemipteran phylogenetics integrated with genomic resources
Target enrichment of conserved genomic regions facilitates collecting sequences of many
orthologous loci from non-model organisms to address phylogenetic, phylogeographic …
orthologous loci from non-model organisms to address phylogenetic, phylogeographic …
Phylogenomics of Ichneumoninae (Hymenoptera, Ichneumonidae) reveals pervasive morphological convergence and the shortcomings of previous classifications
BF Santos, DB Wahl, P Rousse… - Systematic …, 2021 - Wiley Online Library
The evolutionary history of Ichneumoninae, the largest subfamily of ichneumonid wasps, is
investigated using genomic ultraconserved elements (UCEs). The dataset includes 147 …
investigated using genomic ultraconserved elements (UCEs). The dataset includes 147 …
Phylogenomic analysis of the beetle suborder Adephaga with comparison of tailored and generalized ultraconserved element probe performance
Adephaga is the second largest suborder of beetles (Coleoptera) and they serve as
important arthropod predators in both aquatic and terrestrial ecosystems. The suborder is …
important arthropod predators in both aquatic and terrestrial ecosystems. The suborder is …