Recommendations for improving statistical inference in population genomics

P Johri, CF Aquadro, M Beaumont, B Charlesworth… - PLoS …, 2022 - journals.plos.org
The field of population genomics has grown rapidly in response to the recent advent of
affordable, large-scale sequencing technologies. As opposed to the situation during the …

Meiotic recombination in mammals: localization and regulation

F Baudat, Y Imai, B De Massy - Nature Reviews Genetics, 2013 - nature.com
During meiosis, a programmed induction of DNA double-strand breaks (DSBs) leads to the
exchange of genetic material between homologous chromosomes. These exchanges …

Whole‐genome sequencing identifies EN1 as a determinant of bone density and fracture

HF Zheng, V Forgetta, YH Hsu, K Estrada… - Nature, 2015 - nature.com
The extent to which low‐frequency (minor allele frequency (MAF) between 1–5%) and rare
(MAF≤ 1%) variants contribute to complex traits and disease in the general population is …

High-resolution genetic mapping using the Mouse Diversity outbred population

KL Svenson, DM Gatti, W Valdar, CE Welsh, R Cheng… - Genetics, 2012 - academic.oup.com
Abstract The JAX Diversity Outbred population is a new mouse resource derived from
partially inbred Collaborative Cross strains and maintained by randomized outcrossing. As …

Recombination rate variation and speciation: theoretical predictions and empirical results from rabbits and mice

MW Nachman, BA Payseur - … Transactions of the Royal …, 2012 - royalsocietypublishing.org
Recently diverged taxa may continue to exchange genes. A number of models of speciation
with gene flow propose that the frequency of gene exchange will be lower in genomic …

Genome-wide analysis reveals novel molecular features of mouse recombination hotspots

F Smagulova, IV Gregoretti, K Brick, P Khil… - Nature, 2011 - nature.com
Meiotic recombination predominantly occurs at discrete genomic loci called recombination
hotspots, but the features defining these areas are still largely unknown (reviewed in refs) …

Patterns of recombination in snakes reveal a tug-of-war between PRDM9 and promoter-like features

C Hoge, M de Manuel, M Mahgoub, N Okami, Z Fuller… - Science, 2024 - science.org
In some mammals, notably humans, recombination occurs almost exclusively where the
protein PRDM9 binds, whereas in vertebrates lacking an intact PRDM9, such as birds and …

A neutral model for the loss of recombination on sex chromosomes

DL Jeffries, JF Gerchen… - … Transactions of the …, 2021 - royalsocietypublishing.org
The loss of recombination between sex chromosomes has occurred repeatedly throughout
nature, with important implications for their subsequent evolution. Explanations for this …

Genetic analysis of complex traits in the emerging Collaborative Cross

DL Aylor, W Valdar, W Foulds-Mathes, RJ Buus… - Genome …, 2011 - genome.cshlp.org
The Collaborative Cross (CC) is a mouse recombinant inbred strain panel that is being
developed as a resource for mammalian systems genetics. Here we describe an experiment …

A high‐density linkage map enables a second‐generation collared flycatcher genome assembly and reveals the patterns of avian recombination rate variation and …

T Kawakami, L Smeds, N Backström, A Husby… - Molecular …, 2014 - Wiley Online Library
Detailed linkage and recombination rate maps are necessary to use the full potential of
genome sequencing and population genomic analyses. We used a custom collared …