RNA structural dynamics as captured by molecular simulations: a comprehensive overview

J Sponer, G Bussi, M Krepl, P Banáš, S Bottaro… - Chemical …, 2018 - ACS Publications
With both catalytic and genetic functions, ribonucleic acid (RNA) is perhaps the most
pluripotent chemical species in molecular biology, and its functions are intimately linked to …

What recent ribosome structures have revealed about the mechanism of translation

TM Schmeing, V Ramakrishnan - Nature, 2009 - nature.com
The high-resolution structures of ribosomal subunits published in 2000 have revolutionized
the field of protein translation. They facilitated the determination and interpretation of …

[图书][B] Three-dimensional electron microscopy of macromolecular assemblies: visualization of biological molecules in their native state

J Frank - 2006 - books.google.com
Cryoelectron microscopy of biological molecules is among the hottest growth areas in
biophysics and structural biology at present, and Frank is arguably the most distinguished …

Structures of the bacterial ribosome at 3.5 A resolution

BS Schuwirth, MA Borovinskaya, CW Hau, W Zhang… - Science, 2005 - science.org
We describe two structures of the intact bacterial ribosome from Escherichia coli determined
to a resolution of 3.5 angstroms by x-ray crystallography. These structures provide a detailed …

The molecular mechanics of eukaryotic translation

LD Kapp, JR Lorsch - Annual review of biochemistry, 2004 - annualreviews.org
▪ Abstract Great advances have been made in the past three decades in understanding the
molecular mechanics underlying protein synthesis in bacteria, but our understanding of the …

Exploring new targets and chemical space with affinity selection-mass spectrometry

R Prudent, DA Annis, PJ Dandliker… - Nature Reviews …, 2021 - nature.com
Affinity selection-mass spectrometry (AS-MS) is a high-throughput screening (HTS)
technique for drug discovery that enables rapid screening of large collections of compounds …

Fidelity at the molecular level: lessons from protein synthesis

HS Zaher, R Green - Cell, 2009 - cell.com
The faithful and rapid translation of genetic information into peptide sequences is an
indispensable property of the ribosome. The mechanistic understanding of strategies used …

Structural basis for translation termination on the 70S ribosome

M Laurberg, H Asahara, A Korostelev, J Zhu… - Nature, 2008 - nature.com
At termination of protein synthesis, type I release factors promote hydrolysis of the peptidyl-
transfer RNA linkage in response to recognition of a stop codon. Here we describe the …

The active site of the ribosome is composed of two layers of conserved nucleotides with distinct roles in peptide bond formation and peptide release

EM Youngman, JL Brunelle, AB Kochaniak, R Green - Cell, 2004 - cell.com
Peptide bond formation and peptide release are catalyzed in the active site of the large
subunit of the ribosome where universally conserved nucleotides surround the CCA ends of …

Insights into translational termination from the structure of RF2 bound to the ribosome

A Weixlbaumer, H Jin, C Neubauer, RM Voorhees… - Science, 2008 - science.org
The termination of protein synthesis occurs through the specific recognition of a stop codon
in the A site of the ribosome by a release factor (RF), which then catalyzes the hydrolysis of …