Practical application of the linkage disequilibrium method for estimating contemporary effective population size: A review
RS Waples - Molecular Ecology Resources, 2024 - Wiley Online Library
The method to estimate contemporary effective population size (N e) based on patterns of
linkage disequilibrium (LD) at unlinked loci has been widely applied to natural and …
linkage disequilibrium (LD) at unlinked loci has been widely applied to natural and …
Purging putative siblings from population genetic data sets: a cautionary view
RS Waples, EC Anderson - 2017 - Wiley Online Library
Interest has surged recently in removing siblings from population genetic data sets before
conducting downstream analyses. However, even if the pedigree is inferred correctly, this …
conducting downstream analyses. However, even if the pedigree is inferred correctly, this …
Taking the plunge: an introduction to undertaking seascape genetic studies and using biophysical models
The field of seascape genetics aims to evaluate the effects of environmental features on
spatial genetic patterns of marine organisms. Although many methods of genetic analysis …
spatial genetic patterns of marine organisms. Although many methods of genetic analysis …
Landscape genetics of high mountain frog metapopulations
MA Murphy, R Dezzani, DS Pilliod… - Molecular ecology, 2010 - Wiley Online Library
Explaining functional connectivity among occupied habitats is crucial for understanding
metapopulation dynamics and species ecology. Landscape genetics has primarily focused …
metapopulation dynamics and species ecology. Landscape genetics has primarily focused …
Comparative landscape genetics of two pond‐breeding amphibian species in a highly modified agricultural landscape
CS Goldberg, LP Waits - Molecular ecology, 2010 - Wiley Online Library
Evaluating fine‐scale population structure of multiple species in the same landscape
increases our ability to identify common patterns as well as discern ecological differences …
increases our ability to identify common patterns as well as discern ecological differences …
Spatial population genomics of the brown rat (Rattus norvegicus) in New York City
Human commensal species such as rodent pests are often widely distributed across cities
and threaten both infrastructure and public health. Spatially explicit population genomic …
and threaten both infrastructure and public health. Spatially explicit population genomic …
The use and misuse of regression models in landscape genetic analyses
WE Peterman, NS Pope - 2021 - Wiley Online Library
The field of landscape genetics has been rapidly evolving, adopting and adapting analytical
frameworks to address research questions. Current studies are increasingly using …
frameworks to address research questions. Current studies are increasingly using …
Divergent landscape effects on population connectivity in two co‐occurring amphibian species
JL Richardson - Molecular ecology, 2012 - Wiley Online Library
The physical and environmental attributes of landscapes often shape patterns of population
connectivity by influencing dispersal and gene flow. Landscape effects on movement are …
connectivity by influencing dispersal and gene flow. Landscape effects on movement are …
Close‐kin methods to estimate census size and effective population size
RS Waples, P Feutry - Fish and Fisheries, 2022 - Wiley Online Library
The last two decades have witnessed rapid developments and increasing interest in use
of:(1) genetic methods to estimate effective population size (Ne) and (2) close‐kin mark …
of:(1) genetic methods to estimate effective population size (Ne) and (2) close‐kin mark …
Fine-scale landscape genomics helps explain the slow spatial spread of Wolbachia through the Aedes aegypti population in Cairns, Australia
The endosymbiotic bacterium Wolbachia suppresses the capacity for arbovirus transmission
in the mosquito Aedes aegypti, and can spread spatially through wild mosquito populations …
in the mosquito Aedes aegypti, and can spread spatially through wild mosquito populations …