[HTML][HTML] Bioinformatics strategies for taxonomy independent binning and visualization of sequences in shotgun metagenomics
One of main steps in a study of microbial communities is resolving their composition,
diversity and function. In the past, these issues were mostly addressed by the use of …
diversity and function. In the past, these issues were mostly addressed by the use of …
MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm
Background Recovering individual genomes from metagenomic datasets allows access to
uncultivated microbial populations that may have important roles in natural and engineered …
uncultivated microbial populations that may have important roles in natural and engineered …
Accurate binning of metagenomic contigs via automated clustering sequences using information of genomic signatures and marker genes
Metagenomics, the application of shotgun sequencing, facilitates the reconstruction of the
genomes of individual species from natural environments. A major challenge in the genome …
genomes of individual species from natural environments. A major challenge in the genome …
BusyBee Web: metagenomic data analysis by bootstrapped supervised binning and annotation
CC Laczny, C Kiefer, V Galata, T Fehlmann… - Nucleic acids …, 2017 - academic.oup.com
Metagenomics-based studies of mixed microbial communities are impacting biotechnology,
life sciences and medicine. Computational binning of metagenomic data is a powerful …
life sciences and medicine. Computational binning of metagenomic data is a powerful …
Uniform manifold approximation and projection for clustering taxa through vocalizations in a neotropical passerine (rough-legged tyrannulet, Phyllomyias burmeisteri)
RM Parra-Hernández, JI Posada-Quintero… - Animals, 2020 - mdpi.com
Simple Summary Recognizing the different species can help us better understand the
nature. One way to differentiate bird species is the bird song. There are mathematical …
nature. One way to differentiate bird species is the bird song. There are mathematical …
Alignment-free visualization of metagenomic data by nonlinear dimension reduction
The visualization of metagenomic data, especially without prior taxonomic identification of
reconstructed genomic fragments, is a challenging problem in computational biology. An …
reconstructed genomic fragments, is a challenging problem in computational biology. An …
Survival prediction for oral tongue cancer patients via probabilistic genetic algorithm optimized neural network models
X Pan, T Zhang, QP Yang, D Yang… - The British journal of …, 2020 - academic.oup.com
Objectives: High throughput pre-treatment imaging features may predict radiation treatment
outcome and guide individualized treatment in radiotherapy (RT). Given relatively small …
outcome and guide individualized treatment in radiotherapy (RT). Given relatively small …
Species complex delimitations in the genus Hedychium: A machine learning approach for cluster discovery
Premise Statistical methods used by most morphologists to validate species boundaries
(such as principal component analysis [PCA] and non‐metric multidimensional scaling …
(such as principal component analysis [PCA] and non‐metric multidimensional scaling …
Cluster sculptor, an interactive visual clustering system
Abstract This paper describes Cluster Sculptor, a novel interactive clustering system that
allows a user to iteratively update the cluster labels of a data set, and an associated low …
allows a user to iteratively update the cluster labels of a data set, and an associated low …
acdc–Automated Contamination Detection and Confidence estimation for single-cell genome data
Background A major obstacle in single-cell sequencing is sample contamination with foreign
DNA. To guarantee clean genome assemblies and to prevent the introduction of …
DNA. To guarantee clean genome assemblies and to prevent the introduction of …