Big data analytics and precision animal agriculture symposium: Machine learning and data mining advance predictive big data analysis in precision animal agriculture

G Morota, RV Ventura, FF Silva… - Journal of animal …, 2018 - academic.oup.com
Precision animal agriculture is poised to rise to prominence in the livestock enterprise in the
domains of management, production, welfare, sustainability, health surveillance, and …

[HTML][HTML] Progress and opportunities through use of genomics in animal production

HE Jones, PB Wilson - Trends in Genetics, 2022 - cell.com
The rearing of farmed animals is a vital component of global food production systems, but its
impact on the environment, human health, animal welfare, and biodiversity is being …

[HTML][HTML] Evaluation of low-density SNP panels and imputation for cost-effective genomic selection in four aquaculture species

C Kriaridou, S Tsairidou, C Fraslin, G Gorjanc… - Frontiers in …, 2023 - frontiersin.org
Genomic selection can accelerate genetic progress in aquaculture breeding programmes,
particularly for traits measured on siblings of selection candidates. However, it is not widely …

[HTML][HTML] GWAS of reproductive traits in Large White pigs on chip and imputed whole-genome sequencing data

X Wang, L Wang, L Shi, P Zhang, Y Li, M Li… - International Journal of …, 2022 - mdpi.com
Total number born (TNB), number of stillborn (NSB), and gestation length (GL) are
economically important traits in pig production, and disentangling the molecular …

[HTML][HTML] The feasibility of using low-density marker panels for genotype imputation and genomic prediction of crossbred dairy cattle of East Africa

H Aliloo, R Mrode, AM Okeyo, G Ni, ME Goddard… - Journal of dairy …, 2018 - Elsevier
Cost-effective high-density (HD) genotypes of livestock species can be obtained by
genotyping a proportion of the population using a HD panel and the remainder using a …

Genomic selection and its application in animal breeding

F Ibtisham, L Zhang, M Xiao, L An… - The Thai Journal of …, 2017 - digital.car.chula.ac.th
A significant gap exists between animal production and world's population demand.
Although conventional breeding methods have been effectual for selection of animal …

[HTML][HTML] Exploring the optimal strategy of imputation from SNP array to whole-genome sequencing data in farm animals

Y Jiang, H Song, H Gao, Q Zhang, X Ding - Frontiers in genetics, 2022 - frontiersin.org
Genotype imputation from BeadChip to whole-genome sequencing (WGS) data is a cost-
effective method of obtaining genotypes of WGS variants. Beagle, one of the most popular …

[HTML][HTML] Low-density SNP panel for efficient imputation and genomic selection of milk production and technological traits in dairy sheep

H Marina, R Pelayo, B Gutiérrez-Gil… - Journal of Dairy …, 2022 - Elsevier
The present study aimed to ascertain how different strategies for leveraging genomic
information enhance the accuracy of estimated breeding values for milk and cheese-making …

[HTML][HTML] Imputation from SNP chip to sequence: a case study in a Chinese indigenous chicken population

S Ye, X Yuan, X Lin, N Gao, Y Luo, Z Chen, J Li… - Journal of animal …, 2018 - Springer
Background Genome-wide association studies and genomic predictions are thought to be
optimized by using whole-genome sequence (WGS) data. However, sequencing thousands …

[HTML][HTML] Genetic diversity of a New Zealand multi-breed sheep population and composite breeds' history revealed by a high-density SNP chip

LF Brito, JC McEwan, SP Miller, NK Pickering, WE Bain… - BMC genetics, 2017 - Springer
Background Knowledge about the genetic diversity of a population is a crucial parameter for
the implementation of successful genomic selection and conservation of genetic resources …