Learning from co-expression networks: possibilities and challenges
EAR Serin, H Nijveen, HWM Hilhorst… - Frontiers in plant …, 2016 - frontiersin.org
Plants are fascinating and complex organisms. A comprehensive understanding of the
organization, function and evolution of plant genes is essential to disentangle important …
organization, function and evolution of plant genes is essential to disentangle important …
The integrated phenotype
CJ Murren - Integrative and Comparative Biology, 2012 - academic.oup.com
Proper functioning of complex phenotypes requires that multiple traits work together.
Examination of relationships among traits within and between complex characters and how …
Examination of relationships among traits within and between complex characters and how …
PlaNet: combined sequence and expression comparisons across plant networks derived from seven species
The model organism Arabidopsis thaliana is readily used in basic research due to resource
availability and relative speed of data acquisition. A major goal is to transfer acquired …
availability and relative speed of data acquisition. A major goal is to transfer acquired …
Inference of longevity-related genes from a robust coexpression network of seed maturation identifies regulators linking seed storability to biotic defense-related …
K Righetti, JL Vu, S Pelletier, BL Vu, E Glaab… - The plant …, 2015 - academic.oup.com
Seed longevity, the maintenance of viability during storage, is a crucial factor for
preservation of genetic resources and ensuring proper seedling establishment and high …
preservation of genetic resources and ensuring proper seedling establishment and high …
Maize source leaf adaptation to nitrogen deficiency affects not only nitrogen and carbon metabolism but also control of phosphate homeostasis
Crop plant development is strongly dependent on the availability of nitrogen (N) in the soil
and the efficiency of N utilization for biomass production and yield. However, knowledge …
and the efficiency of N utilization for biomass production and yield. However, knowledge …
Genomics of gene banks: a case study in rice
Only a small fraction of the naturally occurring genetic diversity available in the world's
germplasm repositories has been explored to date, but this is expected to change with the …
germplasm repositories has been explored to date, but this is expected to change with the …
Identification of key gene modules in human osteosarcoma by co‐expression analysis weighted gene co‐expression network analysis (WGCNA)
X Liu, AX Hu, JL Zhao, FL Chen - Journal of cellular …, 2017 - Wiley Online Library
Osteosarcoma is the eighth‐most common form of childhood cancer, comprising about 20%
of all primary bone cancers. To date, systemic co‐expression analysis for this cancer is still …
of all primary bone cancers. To date, systemic co‐expression analysis for this cancer is still …
The rice oligonucleotide array database: an atlas of rice gene expression
Background Microarray technologies facilitate high-throughput gene expression analysis.
However, the diversity of platforms for rice gene expression analysis hinders efficient …
However, the diversity of platforms for rice gene expression analysis hinders efficient …
Genetic dissection of the biotic stress response using a genome-scale gene network for rice
Rice is a staple food for one-half the world's population and a model for other
monocotyledonous species. Thus, efficient approaches for identifying key genes controlling …
monocotyledonous species. Thus, efficient approaches for identifying key genes controlling …
Gene coexpression network analysis as a source of functional annotation for rice genes
KL Childs, RM Davidson, CR Buell - PloS one, 2011 - journals.plos.org
With the existence of large publicly available plant gene expression data sets, many groups
have undertaken data analyses to construct gene coexpression networks and functionally …
have undertaken data analyses to construct gene coexpression networks and functionally …