Molecular simulation of electrode-solution interfaces

L Scalfi, M Salanne, B Rotenberg - Annual Review of Physical …, 2021 - annualreviews.org
Many key industrial processes, from electricity production, conversion, and storage to
electrocatalysis or electrochemistry in general, rely on physical mechanisms occurring at the …

Molecular dynamics simulations of electrochemical interfaces

L Zeng, J Peng, J Zhang, X Tan, X Ji, S Li… - The Journal of Chemical …, 2023 - pubs.aip.org
Molecular dynamics (MD) simulations have become a powerful tool for investigating
electrical double layers (EDLs), which play a crucial role in various electrochemical devices …

[HTML][HTML] Energy variational analysis of ions in water and channels: Field theory for primitive models of complex ionic fluids

B Eisenberg, Y Hyon, C Liu - The Journal of Chemical Physics, 2010 - pubs.aip.org
Ionic solutions are mixtures of interacting anions and cations. They hardly resemble dilute
gases of uncharged noninteracting point particles described in elementary textbooks …

PNP equations with steric effects: a model of ion flow through channels

TL Horng, TC Lin, C Liu… - The Journal of Physical …, 2012 - ACS Publications
The flow of current through an ionic channel is studied using the energetic variational
approach of Liu applied to the primitive (implicit solvent) model of ionic solutions. This …

Dielectric effects in the self-assembly of binary colloidal aggregates

K Barros, E Luijten - Physical review letters, 2014 - APS
Electrostatic interactions play an important role in numerous self-assembly phenomena,
including colloidal aggregation. Although colloids typically have a dielectric constant that …

Poisson–Nernst–Planck systems for ion channels with permanent charges

B Eisenberg, W Liu - SIAM Journal on Mathematical Analysis, 2007 - SIAM
Ionic channels and semiconductor devices use atomic scale structures to control
macroscopic flows from one reservoir to another. The one-dimensional steady-state Poisson …

Second-order Poisson–Nernst–Planck solver for ion transport

Q Zheng, D Chen, GW Wei - Journal of computational physics, 2011 - Elsevier
Abstract The Poisson–Nernst–Planck (PNP) theory is a simplified continuum model for a
wide variety of chemical, physical and biological applications. Its ability of providing …

(De) constructing the ryanodine receptor: modeling ion permeation and selectivity of the calcium release channel

D Gillespie, L Xu, Y Wang… - The Journal of Physical …, 2005 - ACS Publications
Biological ion channels are proteins that passively conduct ions across membranes that are
otherwise impermeable to ions. Here, we present a model of ion permeation and selectivity …

[HTML][HTML] Steric selectivity in Na channels arising from protein polarization and mobile side chains

D Boda, W Nonner, M Valiskó, D Henderson… - Biophysical journal, 2007 - cell.com
Monte Carlo simulations of equilibrium selectivity of Na channels with a DEKA locus are
performed over a range of radius R and protein dielectric coefficient ɛ p. Selectivity arises …

Machine learning surrogates for molecular dynamics simulations of soft materials

JCS Kadupitiya, F Sun, G Fox, V Jadhao - Journal of Computational …, 2020 - Elsevier
Molecular dynamics (MD) simulations accelerated by high-performance computing (HPC)
methods are powerful tools to investigate and extract the microscopic mechanisms …