Avian diversity: Speciation, macroevolution, and ecological function
JA Tobias, J Ottenburghs… - Annual Review of Ecology …, 2020 - annualreviews.org
The origin, distribution, and function of biological diversity are fundamental themes of
ecology and evolutionary biology. Research on birds has played a major role in the history …
ecology and evolutionary biology. Research on birds has played a major role in the history …
Genetic variation and the de novo assembly of human genomes
The discovery of genetic variation and the assembly of genome sequences are both
inextricably linked to advances in DNA-sequencing technology. Short-read massively …
inextricably linked to advances in DNA-sequencing technology. Short-read massively …
[HTML][HTML] Towards complete and error-free genome assemblies of all vertebrate species
High-quality and complete reference genome assemblies are fundamental for the
application of genomics to biology, disease, and biodiversity conservation. However, such …
application of genomics to biology, disease, and biodiversity conservation. However, such …
Dense sampling of bird diversity increases power of comparative genomics
Whole-genome sequencing projects are increasingly populating the tree of life and
characterizing biodiversity–. Sparse taxon sampling has previously been proposed to …
characterizing biodiversity–. Sparse taxon sampling has previously been proposed to …
[HTML][HTML] Progressive Cactus is a multiple-genome aligner for the thousand-genome era
New genome assemblies have been arriving at a rapidly increasing pace, thanks to
decreases in sequencing costs and improvements in third-generation sequencing …
decreases in sequencing costs and improvements in third-generation sequencing …
A cortex-like canonical circuit in the avian forebrain
INTRODUCTION For more than a century, the avian forebrain has been a riddle for
neuroscientists. Birds demonstrate exceptional cognitive abilities comparable to those of …
neuroscientists. Birds demonstrate exceptional cognitive abilities comparable to those of …
[HTML][HTML] Platypus and echidna genomes reveal mammalian biology and evolution
Egg-laying mammals (monotremes) are the only extant mammalian outgroup to therians
(marsupial and eutherian animals) and provide key insights into mammalian evolution 1, 2 …
(marsupial and eutherian animals) and provide key insights into mammalian evolution 1, 2 …
Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
NA O'Leary, MW Wright, JR Brister, S Ciufo… - Nucleic acids …, 2016 - academic.oup.com
The RefSeq project at the National Center for Biotechnology Information (NCBI) maintains
and curates a publicly available database of annotated genomic, transcript, and protein …
and curates a publicly available database of annotated genomic, transcript, and protein …
Whole-genome analyses resolve early branches in the tree of life of modern birds
To better determine the history of modern birds, we performed a genome-scale phylogenetic
analysis of 48 species representing all orders of Neoaves using phylogenomic methods …
analysis of 48 species representing all orders of Neoaves using phylogenomic methods …
Uniclust databases of clustered and deeply annotated protein sequences and alignments
We present three clustered protein sequence databases, Uniclust90, Uniclust50, Uniclust30
and three databases of multiple sequence alignments (MSAs), Uniboost10, Uniboost20 and …
and three databases of multiple sequence alignments (MSAs), Uniboost10, Uniboost20 and …