Targeting RNA with small molecules

JR Thomas, PJ Hergenrother - Chemical reviews, 2008 - ACS Publications
The recently discovered functions of RNA dramatically expand the cellular roles for this
macromolecule. RNA can no longer be viewed as a passive element, working simply as an …

RNA structural motifs: building blocks of a modular biomolecule

DK Hendrix, SE Brenner, SR Holbrook - Quarterly reviews of …, 2005 - cambridge.org
1. Introduction 2222. What is an RNA motif? 2222.1 Sequence vs. structural motifs 2222.2
RNA structural motifs 2232.3 RNA structural elements vs. motifs 2232.4 Specific recognition …

Harnessing the CRISPR/Cas9 system to disrupt latent HIV-1 provirus

H Ebina, N Misawa, Y Kanemura, Y Koyanagi - Scientific reports, 2013 - nature.com
Even though highly active anti-retroviral therapy is able to keep HIV-1 replication under
control, the virus can lie in a dormant state within the host genome, known as a latent …

Presence of Tat and transactivation response element in spinal fluid despite antiretroviral therapy

LJ Henderson, TP Johnson, BR Smith, LB Reoma… - Aids, 2019 - journals.lww.com
Objective: The aim of this study was to measure the protein concentration and biological
activity of HIV-1 Tat in cerebrospinal fluid (CSF) of individuals on suppressive antiretroviral …

Homogeneous fluorescence-based DNA detection with water-soluble conjugated polymers

B Liu, GC Bazan - Chemistry of materials, 2004 - ACS Publications
Methods for real-time, high-sensitivity polynucleotide detection are of vast scientific and
economic importance. Homogeneous biosensor assays that take advantage of the collective …

Visualizing transient low-populated structures of RNA

EA Dethoff, K Petzold, J Chugh, A Casiano-Negroni… - Nature, 2012 - nature.com
The visualization of RNA conformational changes has provided fundamental insights into
how regulatory RNAs carry out their biological functions. The RNA structural transitions that …

Identification of biologically active, HIV TAR RNA-binding small molecules using small molecule microarrays

J Sztuba-Solinska, SR Shenoy, P Gareiss… - Journal of the …, 2014 - ACS Publications
Identifying small molecules that selectively bind to structured RNA motifs remains an
important challenge in developing potent and specific therapeutics. Most strategies to find …

Using RNA secondary structures to guide sequence motif finding towards single-stranded regions

M Hiller, R Pudimat, A Busch… - Nucleic acids …, 2006 - academic.oup.com
ABSTRACT RNA binding proteins recognize RNA targets in a sequence specific manner.
Apart from the sequence, the secondary structure context of the binding site also affects the …

Structural mechanism for HIV-1 TAR loop recognition by Tat and the super elongation complex

U Schulze-Gahmen, JH Hurley - Proceedings of the …, 2018 - National Acad Sciences
Promoter-proximal pausing by RNA polymerase II (Pol II) is a key regulatory step in human
immunodeficiency virus-1 (HIV-1) transcription and thus in the reversal of HIV latency. By …

Enhancer RNAs step forward: new insights into enhancer function

LJ Harrison, D Bose - Development, 2022 - journals.biologists.com
Enhancers confer precise spatiotemporal patterns of gene expression in response to
developmental and environmental stimuli. Over the last decade, the transcription of …