The gene ontology knowledgebase in 2023

SA Aleksander, J Balhoff, S Carbon, JM Cherry… - Genetics, 2023 - academic.oup.com
Abstract The Gene Ontology (GO) knowledgebase (http://geneontology. org) is a
comprehensive resource concerning the functions of genes and gene products (proteins …

Cell type ontologies of the Human Cell Atlas

D Osumi-Sutherland, C Xu, M Keays, AP Levine… - Nature cell …, 2021 - nature.com
Massive single-cell profiling efforts have accelerated our discovery of the cellular
composition of the human body while at the same time raising the need to formalize this new …

[PDF][PDF] The gene ontology knowledgebase in 2023

D Ebert, M Feuermann, P Gaudet, NL Harris, DP Hill… - Genetics, 2023 - crick.figshare.com
Abstract The Gene Ontology (GO) knowledgebase (http://geneontology. org) is a
comprehensive resource concerning the functions of genes and gene products (proteins …

Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly

H Li, J Janssens, M De Waegeneer, SS Kolluru… - Science, 2022 - science.org
For more than 100 years, the fruit fly Drosophila melanogaster has been one of the most
studied model organisms. Here, we present a single-cell atlas of the adult fly, Tabula …

Expression Atlas update: gene and protein expression in multiple species

P Moreno, S Fexova, N George… - Nucleic acids …, 2022 - academic.oup.com
Abstract The EMBL-EBI Expression Atlas is an added value knowledge base that enables
researchers to answer the question of where (tissue, organism part, developmental stage …

FlyBase at 25: looking to the future

LS Gramates, SJ Marygold, G Santos… - Nucleic acids …, 2016 - academic.oup.com
Abstract Since 1992, FlyBase (flybase. org) has been an essential online resource for the
Drosophila research community. Concentrating on the most extensively studied species …

Harmonizing model organism data in the Alliance of Genome Resources

Genetics, 2022 - academic.oup.com
Abstract The Alliance of Genome Resources (the Alliance) is a combined effort of 7
knowledgebase projects: Saccharomyces Genome Database, WormBase, FlyBase, Mouse …

The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals

FB Bastian, J Roux, A Niknejad, A Comte… - Nucleic acids …, 2021 - academic.oup.com
Bgee is a database to retrieve and compare gene expression patterns in multiple animal
species, produced by integrating multiple data types (RNA-Seq, Affymetrix, in situ …

The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability

AD Diehl, TF Meehan, YM Bradford, MH Brush… - Journal of biomedical …, 2016 - Springer
Abstract Background The Cell Ontology (CL) is an OBO Foundry candidate ontology
covering the domain of canonical, natural biological cell types. Since its inception in 2005 …

[HTML][HTML] The Gene Ontology knowledgebase in 2023

GO Central, SA Aleksander, J Balhoff, S Carbon… - Genetics, 2023 - ncbi.nlm.nih.gov
Abstract The Gene Ontology (GO) knowledgebase (http://geneontology. org) is a
comprehensive resource concerning the functions of genes and gene products (proteins …