Metagenomics: An effective approach for exploring microbial diversity and functions

NN Nam, HDK Do, KT Loan Trinh, NY Lee - Foods, 2023 - mdpi.com
Various fields have been identified in the “omics” era, such as genomics, proteomics,
transcriptomics, metabolomics, phenomics, and metagenomics. Among these …

Improved sampling and DNA extraction procedures for microbiome analysis in food-processing environments

C Barcenilla, JF Cobo-Díaz, F De Filippis… - Nature …, 2024 - nature.com
Deep investigation of the microbiome of food-production and food-processing environments
through whole-metagenome sequencing (WMS) can provide detailed information on the …

Postglacial adaptations enabled colonization and quasi-clonal dispersal of ammonia-oxidizing archaea in modern European large lakes

DK Ngugi, MM Salcher, AS Andrei, R Ghai, F Klotz… - Science …, 2023 - science.org
Ammonia-oxidizing archaea (AOA) play a key role in the aquatic nitrogen cycle. Their
genetic diversity is viewed as the outcome of evolutionary processes that shaped ancestral …

Large-scale phylogenomics of aquatic bacteria reveal molecular mechanisms for adaptation to salinity

KT Jurdzinski, M Mehrshad, LF Delgado, Z Deng… - Science …, 2023 - science.org
The crossing of environmental barriers poses major adaptive challenges. Rareness of
freshwater-marine transitions separates the bacterial communities, but how these are …

[HTML][HTML] Global marine microbial diversity and its potential in bioprospecting

J Chen, Y Jia, Y Sun, K Liu, C Zhou, C Liu, D Li, G Liu… - Nature, 2024 - nature.com
The past two decades has witnessed a remarkable increase in the number of microbial
genomes retrieved from marine systems,. However, it has remained challenging to translate …

Diverse secondary metabolites are expressed in particle-associated and free-living microorganisms of the permanently anoxic Cariaco Basin

D Geller-McGrath, P Mara, GT Taylor, E Suter… - Nature …, 2023 - nature.com
Secondary metabolites play essential roles in ecological interactions and nutrient
acquisition, and are of interest for their potential uses in medicine and biotechnology …

Carbon fixation pathways across the bacterial and archaeal tree of life

AN Garritano, W Song, T Thomas - PNAS nexus, 2022 - academic.oup.com
Carbon fixation is a critical process for our planet; however, its distribution across the
bacterial and archaeal domains of life has not been comprehensively studied. Here, we …

Oxygen availability driven trends in DOM molecular composition and reactivity in a seasonally stratified fjord

X Chen, J Liu, J Chen, J Wang, X Xiao, C He, Q Shi… - Water Research, 2022 - Elsevier
Ocean deoxygenation could potentially trigger substantial changes in the composition and
reactivity of dissolved organic matter (DOM) pool, which plays an important role in the global …

[HTML][HTML] Microbial communities on plastic particles in surface waters differ from subsurface waters of the North Pacific Subtropical Gyre

A Vaksmaa, M Egger, C Lüke, PD Martins… - Marine Pollution …, 2022 - Elsevier
The long-term fate of plastics in the ocean and their interactions with marine microorganisms
remain poorly understood. In particular, the role of sinking plastic particles as a transport …

Metagenomes from coastal sediments of Kuwait: Insights into the microbiome, metabolic functions and resistome

N Habibi, S Uddin, H Al-Sarawi, A Aldhameer… - Microorganisms, 2023 - mdpi.com
Coastal sediments in the proximity of wastewater and emergency outfalls are often sinks of
pharmaceutical compounds and other organic and inorganic contaminants that are likely to …