CHARMM at 45: Enhancements in accessibility, functionality, and speed

W Hwang, SL Austin, A Blondel… - The Journal of …, 2024 - ACS Publications
Since its inception nearly a half century ago, CHARMM has been playing a central role in
computational biochemistry and biophysics. Commensurate with the developments in …

Cost-benefit analysis of cloud computing versus desktop grids

D Kondo, B Javadi, P Malecot… - … on Parallel & …, 2009 - ieeexplore.ieee.org
Cloud Computing has taken commercial computing by storm. However, adoption of cloud
computing platforms and services by the scientific community is in its infancy as the …

Arc diagrams: Visualizing structure in strings

M Wattenberg - IEEE Symposium on Information Visualization …, 2002 - ieeexplore.ieee.org
This paper introduces a new visualization method, the arc diagram, which is capable of
representing complex patterns of repetition in string data. Arc diagrams improve over …

The computational and storage potential of volunteer computing

DP Anderson, G Fedak - … on Cluster Computing and the Grid …, 2006 - ieeexplore.ieee.org
" Volunteer computing" uses Internet-connected computers, volunteered by their owners, as
a source of computing power and storage. This paper studies the potential capacity of …

Moon: Mapreduce on opportunistic environments

H Lin, X Ma, J Archuleta, W Feng, M Gardner… - Proceedings of the 19th …, 2010 - dl.acm.org
MapReduce offers an ease-of-use programming paradigm for processing large data sets,
making it an attractive model for distributed volunteer computing systems. However, unlike …

The Failure Trace Archive: Enabling the comparison of failure measurements and models of distributed systems

B Javadi, D Kondo, A Iosup, D Epema - Journal of Parallel and Distributed …, 2013 - Elsevier
With the increasing presence, scale, and complexity of distributed systems, resource failures
are becoming an important and practical topic of computer science research. While …

On the dynamic resource availability in grids

A Iosup, M Jan, O Sonmez… - 2007 8th IEEE/ACM …, 2007 - ieeexplore.ieee.org
Currently deployed grids gather together thousands of computational and storage resources
for the benefit of a large community of scientists. However, the large scale, the wide …

Resource management for rapid application turnaround on enterprise desktop grids

D Kondo, AA Chien, H Casanova - SC'04: Proceedings of the …, 2004 - ieeexplore.ieee.org
Desktop grids are popular platforms for high throughput applications, but due their inherent
resource volatility it is difficult to exploit them for applications that require rapid turnaround …

Characterizing and classifying desktop grid

SJ Choi, HS Kim, EJ Byun, MS Baik… - … Computing and the …, 2007 - ieeexplore.ieee.org
Desktop Grid has recently received the strong attraction for executing high throughput
applications as CPU, storage and network capacities improve and become cheaper …

Characterizing resource availability in enterprise desktop grids

D Kondo, G Fedak, F Cappello, AA Chien… - Future Generation …, 2007 - Elsevier
Desktop grids, which use the idle cycles of many desktop PCs, are one of the largest
distributed systems in the world. Despite the popularity and success of many desktop grid …