Deep learning for cellular image analysis

E Moen, D Bannon, T Kudo, W Graf, M Covert… - Nature …, 2019 - nature.com
Recent advances in computer vision and machine learning underpin a collection of
algorithms with an impressive ability to decipher the content of images. These deep learning …

Fundamental principles in bacterial physiology—history, recent progress, and the future with focus on cell size control: a review

S Jun, F Si, R Pugatch, M Scott - Reports on Progress in Physics, 2018 - iopscience.iop.org
Bacterial physiology is a branch of biology that aims to understand overarching principles of
cellular reproduction. Many important issues in bacterial physiology are inherently …

Omnipose: a high-precision morphology-independent solution for bacterial cell segmentation

KJ Cutler, C Stringer, TW Lo, L Rappez, N Stroustrup… - Nature …, 2022 - nature.com
Advances in microscopy hold great promise for allowing quantitative and precise
measurement of morphological and molecular phenomena at the single-cell level in …

[HTML][HTML] A gut commensal-produced metabolite mediates colonization resistance to Salmonella infection

A Jacobson, L Lam, M Rajendram, F Tamburini… - Cell host & …, 2018 - cell.com
The intestinal microbiota provides colonization resistance against pathogens, limiting
pathogen expansion and transmission. These microbiota-mediated mechanisms were …

A dual-mechanism antibiotic kills gram-negative bacteria and avoids drug resistance

JK Martin, JP Sheehan, BP Bratton, GM Moore… - Cell, 2020 - cell.com
The rise of antibiotic resistance and declining discovery of new antibiotics has created a
global health crisis. Of particular concern, no new antibiotic classes have been approved for …

Cell wall synthesis and remodelling dynamics determine division site architecture and cell shape in Escherichia coli

PP Navarro, A Vettiger, VY Ananda, PM Llopis… - Nature …, 2022 - nature.com
The bacterial division apparatus catalyses the synthesis and remodelling of septal
peptidoglycan (sPG) to build the cell wall layer that fortifies the daughter cell poles …

MreB filaments align along greatest principal membrane curvature to orient cell wall synthesis

S Hussain, CN Wivagg, P Szwedziak, F Wong… - Elife, 2018 - elifesciences.org
MreB is essential for rod shape in many bacteria. Membrane-associated MreB filaments
move around the rod circumference, helping to insert cell wall in the radial direction to …

Robust surface-to-mass coupling and turgor-dependent cell width determine bacterial dry-mass density

ER Oldewurtel, Y Kitahara… - Proceedings of the …, 2021 - National Acad Sciences
During growth, cells must expand their cell volumes in coordination with biomass to control
the level of cytoplasmic macromolecular crowding. Dry-mass density, the average ratio of …

How to build a bacterial cell: MreB as the foreman of E. coli construction

H Shi, BP Bratton, Z Gitai, KC Huang - Cell, 2018 - cell.com
Cell shape matters across the kingdoms of life, and cells have the remarkable capacity to
define and maintain specific shapes and sizes. But how are the shapes of micron-sized cells …

Class-A penicillin binding proteins do not contribute to cell shape but repair cell-wall defects

A Vigouroux, B Cordier, A Aristov, L Alvarez… - Elife, 2020 - elifesciences.org
Cell shape and cell-envelope integrity of bacteria are determined by the peptidoglycan cell
wall. In rod-shaped Escherichia coli, two conserved sets of machinery are essential for cell …