Keystone taxa as drivers of microbiome structure and functioning

S Banerjee, K Schlaeppi… - Nature Reviews …, 2018 - nature.com
Microorganisms have a pivotal role in the functioning of ecosystems. Recent studies have
shown that microbial communities harbour keystone taxa, which drive community …

[HTML][HTML] From diversity to complexity: Microbial networks in soils

K Guseva, S Darcy, E Simon, LV Alteio… - Soil Biology and …, 2022 - Elsevier
Network analysis has been used for many years in ecological research to analyze
organismal associations, for example in food webs, plant-plant or plant-animal interactions …

Climate warming enhances microbial network complexity and stability

MM Yuan, X Guo, L Wu, YA Zhang, N Xiao… - Nature Climate …, 2021 - nature.com
Unravelling the relationships between network complexity and stability under changing
climate is a challenging topic in theoretical ecology that remains understudied in the field of …

The plastisphere of biodegradable and conventional microplastics from residues exhibit distinct microbial structure, network and function in plastic-mulching farmland

K Li, W Jia, L Xu, M Zhang, Y Huang - Journal of Hazardous Materials, 2023 - Elsevier
The inhomogeneity of plastisphere and soil may result in different microbial communities,
thus potentially affecting soil functions. Biodegradable plastics offer an alternative to …

[HTML][HTML] Specialized metabolic functions of keystone taxa sustain soil microbiome stability

W Xun, Y Liu, W Li, Y Ren, W Xiong, Z Xu, N Zhang… - Microbiome, 2021 - Springer
Background The relationship between biodiversity and soil microbiome stability remains
poorly understood. Here, we investigated the impacts of bacterial phylogenetic diversity on …

Reduced microbial stability in the active layer is associated with carbon loss under alpine permafrost degradation

MH Wu, SY Chen, JW Chen, K Xue… - Proceedings of the …, 2021 - National Acad Sciences
Permafrost degradation may induce soil carbon (C) loss, critical for global C cycling, and be
mediated by microbes. Despite larger C stored within the active layer of permafrost regions …

Selective enrichment of bacterial pathogens by microplastic biofilm

X Wu, J Pan, M Li, Y Li, M Bartlam, Y Wang - Water research, 2019 - Elsevier
Microplastics have been found to be ubiquitous in freshwater ecosystems, providing a novel
substrate for biofilm formation. Here, we incubated biofilm on microplastics and two natural …

NetCoMi: network construction and comparison for microbiome data in R

S Peschel, CL Müller, E Von Mutius… - Briefings in …, 2021 - academic.oup.com
Motivation Estimating microbial association networks from high-throughput sequencing data
is a common exploratory data analysis approach aiming at understanding the complex …

Initial soil microbiome composition and functioning predetermine future plant health

Z Wei, Y Gu, VP Friman, GA Kowalchuk, Y Xu… - Science …, 2019 - science.org
Plant-pathogen interactions are shaped by multiple environmental factors, making it difficult
to predict disease dynamics even in relatively simple agricultural monocultures. Here, we …

Evidence of selective enrichment of bacterial assemblages and antibiotic resistant genes by microplastics in urban rivers

J Wang, X Qin, J Guo, W Jia, Q Wang, M Zhang… - Water Research, 2020 - Elsevier
The ubiquitous presence of microplastics in aquatic environments has recently drawn
considerable attention due to their potential threat to the entire ecosystem. The colonization …