DNA methylation methods: Global DNA methylation and methylomic analyses
S Li, TO Tollefsbol - Methods, 2021 - Elsevier
DNA methylation provides a pivotal layer of epigenetic regulation in eukaryotes that has
significant involvement for numerous biological processes in health and disease. The …
significant involvement for numerous biological processes in health and disease. The …
Analysing and interpreting DNA methylation data
C Bock - Nature Reviews Genetics, 2012 - nature.com
DNA methylation is an epigenetic mark that has suspected regulatory roles in a broad range
of biological processes and diseases. The technology is now available for studying DNA …
of biological processes and diseases. The technology is now available for studying DNA …
[HTML][HTML] Comparison of whole-genome bisulfite sequencing library preparation strategies identifies sources of biases affecting DNA methylation data
Background Whole-genome bisulfite sequencing (WGBS) is becoming an increasingly
accessible technique, used widely for both fundamental and disease-oriented research …
accessible technique, used widely for both fundamental and disease-oriented research …
Nondestructive, base-resolution sequencing of 5-hydroxymethylcytosine using a DNA deaminase
EK Schutsky, JE DeNizio, P Hu, MY Liu, CS Nabel… - Nature …, 2018 - nature.com
Here we present APOBEC-coupled epigenetic sequencing (ACE-seq), a bisulfite-free
method for localizing 5-hydroxymethylcytosine (5hmC) at single-base resolution with low …
method for localizing 5-hydroxymethylcytosine (5hmC) at single-base resolution with low …
[HTML][HTML] Transcriptome-Wide Mapping of 5-methylcytidine RNA Modifications in Bacteria, Archaea, and Yeast Reveals m5C within Archaeal mRNAs
The presence of 5-methylcytidine (m5C) in tRNA and rRNA molecules of a wide variety of
organisms was first observed more than 40 years ago. However, detection of this …
organisms was first observed more than 40 years ago. However, detection of this …
DNA methylation detection: bisulfite genomic sequencing analysis
Y Li, TO Tollefsbol - Epigenetics protocols, 2011 - Springer
DNA methylation, which most commonly occurs at the C5 position of cytosines within CpG
dinucleotides, plays a pivotal role in many biological procedures such as gene expression …
dinucleotides, plays a pivotal role in many biological procedures such as gene expression …
[HTML][HTML] DNA methylation in solid tumors: functions and methods of detection
A Martisova, J Holcakova, N Izadi, R Sebuyoya… - International Journal of …, 2021 - mdpi.com
DNA methylation, ie, addition of methyl group to 5′-carbon of cytosine residues in CpG
dinucleotides, is an important epigenetic modification regulating gene expression, and thus …
dinucleotides, is an important epigenetic modification regulating gene expression, and thus …
PerlPrimer: cross-platform, graphical primer design for standard, bisulphite and real-time PCR
OJ Marshall - Bioinformatics, 2004 - academic.oup.com
PerlPrimer is a cross-platform graphical user interface application for the design of primers
for standard, bisulphite and real-time PCR, and sequencing. The program incorporates …
for standard, bisulphite and real-time PCR, and sequencing. The program incorporates …
Cytosine DNA Methylation Is Found in Drosophila melanogaster but Absent in Saccharomyces cerevisiae, Schizosaccharomyces pombe, and Other Yeast Species
F Capuano, M Mülleder, R Kok, HJ Blom… - Analytical …, 2014 - ACS Publications
The methylation of cytosine to 5-methylcytosine (5-meC) is an important epigenetic DNA
modification in many bacteria, plants, and mammals, but its relevance for important model …
modification in many bacteria, plants, and mammals, but its relevance for important model …
[HTML][HTML] Evolution of DNA methylation in the human brain
DNA methylation is a critical regulatory mechanism implicated in development, learning,
memory, and disease in the human brain. Here we have elucidated DNA methylation …
memory, and disease in the human brain. Here we have elucidated DNA methylation …