DNA replication origin activation in space and time

M Fragkos, O Ganier, P Coulombe… - Nature reviews Molecular …, 2015 - nature.com
DNA replication begins with the assembly of pre-replication complexes (pre-RCs) at
thousands of DNA replication origins during the G1 phase of the cell cycle. At the G1–S …

Eukaryotic DNA replication origins: many choices for appropriate answers

M Méchali - Nature reviews Molecular cell biology, 2010 - nature.com
At each cell division in humans, 30,000–50,000 DNA replication origins are activated, and it
remains unclear how they are selected and recognized by replication factors. DNA …

Genome-wide mapping of human DNA-replication origins: levels of transcription at ORC1 sites regulate origin selection and replication timing

GI Dellino, D Cittaro, R Piccioni, L Luzi, S Banfi… - Genome …, 2013 - genome.cshlp.org
We report the genome-wide mapping of ORC1 binding sites in mammals, by chromatin
immunoprecipitation and parallel sequencing (ChIP-seq). ORC1 binding sites in HeLa cells …

Eukaryotic DNA replication control: lock and load, then fire

D Remus, JFX Diffley - Current opinion in cell biology, 2009 - Elsevier
The initiation of chromosomal DNA replication involves initiator proteins that recruit and load
hexameric DNA helicases at replication origins. This helicase loading step is tightly …

The completed macronuclear genome of a model ciliate Tetrahymena thermophila and its application in genome scrambling and copy number analyses

Y Sheng, L Duan, T Cheng, Y Qiao, NA Stover… - Science China Life …, 2020 - Springer
The ciliate Tetrahymena thermophila has been a powerful model system for molecular and
cellular biology. However, some investigations have been limited due to the incomplete …

Origins of DNA replication

B Ekundayo, F Bleichert - PLoS genetics, 2019 - journals.plos.org
In all kingdoms of life, DNA is used to encode hereditary information. Propagation of the
genetic material between generations requires timely and accurate duplication of DNA by …

A knowledge-based scoring function for protein-RNA interactions derived from a statistical mechanics-based iterative method

SY Huang, X Zou - Nucleic acids research, 2014 - academic.oup.com
Protein-RNA interactions play important roles in many biological processes. Given the high
cost and technique difficulties in experimental methods, computationally predicting the …

Human origin recognition complex binds preferentially to G-quadruplex-preferable RNA and single-stranded DNA

S Hoshina, K Yura, H Teranishi, N Kiyasu… - Journal of Biological …, 2013 - ASBMB
Origin recognition complex (ORC), consisting of six subunits ORC1–6, is known to bind to
replication origins and function in the initiation of DNA replication in eukaryotic cells. In …

The origin recognition complex protein family

BP Duncker, IN Chesnokov, BJ McConkey - Genome biology, 2009 - Springer
Origin recognition complex (ORC) proteins were first discovered as a six-subunit
assemblage in budding yeast that promotes the initiation of DNA replication. Orc1-5 appear …

PRIDB: a protein–RNA interface database

BA Lewis, RR Walia, M Terribilini… - Nucleic acids …, 2010 - academic.oup.com
Abstract The Protein–RNA Interface Database (PRIDB) is a comprehensive database of
protein–RNA interfaces extracted from complexes in the Protein Data Bank (PDB). It is …