Better the devil you know? Guidelines for insightful utilization of nrDNA ITS in species-level evolutionary studies in plants

GN Feliner, JA Rosselló - Molecular phylogenetics and evolution, 2007 - Elsevier
The internal transcribed spacers (ITS) of the nuclear ribosomal 18S–5.8 S–26S cistron
continue to be the most popular non-plastid region for species-level phylogenetic studies of …

Evolution of Rosaceae fruit types based on nuclear phylogeny in the context of geological times and genome duplication

Y Xiang, CH Huang, Y Hu, J Wen, S Li… - Molecular biology …, 2017 - academic.oup.com
Fruits are the defining feature of angiosperms, likely have contributed to angiosperm
successes by protecting and dispersing seeds, and provide foods to humans and other …

Contributions of plant molecular systematics to studies of molecular evolution

ED Soltis, PS Soltis - Plant Molecular Biology, 2000 - Springer
Dobzhansky stated that nothing in biology makes sense except in the light of evolution. A
close corollary, and the central theme of this paper, is that everything makes a lot more …

Paraphyly of Tarasa (Malvaceae) and diverse origins of the polyploid species

JA Tate, BB Simpson - Systematic Botany, 2003 - BioOne
A molecular phylogenetic analysis of the Andean genus Tarasa (Malvaceae) and related
genera yielded unexpected results regarding generic boundaries, the origins of polyploidy …

Molecular phylogeny and taxonomy of the genus Pythium

CA Levesque, AWAM De Cock - Mycological research, 2004 - cambridge.org
The phylogeny of 116 species and varieties of Pythium was studied using parsimony and
phenetic analysis of the ITS region of the nuclear ribosomal DNA. The D1, D2 and D3 …

Phylogeny, biogeography, and processes of molecular differentiation in Quercus subgenus Quercus (Fagaceae)

PS Manos, JJ Doyle, KC Nixon - Molecular phylogenetics and evolution, 1999 - Elsevier
Quercus is one of the most abundant and economically important genera of woody plants in
the Northern Hemisphere. To infer phylogenetic relationships within Quercus subgenus …

Phylogeny of Opuntia ss (Cactaceae): Clade delineation, geographic origins, and reticulate evolution

LC Majure, R Puente, MP Griffith… - American journal of …, 2012 - Wiley Online Library
• Premise of the study: The opuntias (nopales, prickly pears) are not only culturally,
ecologically, economically, and medicinally important, but are renowned for their taxonomic …

Phylogenetic relationships in Pleurothallidinae (Orchidaceae): combined evidence from nuclear and plastid DNA sequences

AM Pridgeon, R Solano… - American Journal of …, 2001 - Wiley Online Library
To evaluate the monophyly of subtribe Pleurothallidinae (Epidendreae: Orchidaceae) and
the component genera and to reveal evolutionary relationships and trends, we sequenced …

Rapid diversification of the cotton genus (Gossypium: Malvaceae) revealed by analysis of sixteen nuclear and chloroplast genes

RC Cronn, RL Small, T Haselkorn… - American journal of …, 2002 - Wiley Online Library
Previous molecular phylogenetic studies have failed to resolve the branching order among
the major cotton (Gossypium) lineages, and it has been unclear whether this reflects actual …

Unraveling the phylogeny of polygrammoid ferns (Polypodiaceae and Grammitidaceae): exploring aspects of the diversification of epiphytic plants

H Schneider, AR Smith, R Cranfill… - Molecular phylogenetics …, 2004 - Elsevier
We explore the phylogeny of the polygrammoid ferns using nucleotide sequences derived
from three plastid loci for each of 98 selected species. Our analyses recovered four major …