[HTML][HTML] Implementing and testing the multispecies coalescent model: a valuable paradigm for phylogenomics
In recent articles published in Molecular Phylogenetics and Evolution, Mark Springer and
John Gatesy (S&G) present numerous criticisms of recent implementations and testing of the …
John Gatesy (S&G) present numerous criticisms of recent implementations and testing of the …
Applications of next-generation sequencing to phylogeography and phylogenetics
This is a time of unprecedented transition in DNA sequencing technologies. Next-generation
sequencing (NGS) clearly holds promise for fast and cost-effective generation of multilocus …
sequencing (NGS) clearly holds promise for fast and cost-effective generation of multilocus …
[HTML][HTML] Robust demographic inference from genomic and SNP data
We introduce a flexible and robust simulation-based framework to infer demographic
parameters from the site frequency spectrum (SFS) computed on large genomic datasets …
parameters from the site frequency spectrum (SFS) computed on large genomic datasets …
[HTML][HTML] Genome-wide SNP profiling of worldwide goat populations reveals strong partitioning of diversity and highlights post-domestication migration routes
Background Goat populations that are characterized within the AdaptMap project cover a
large part of the worldwide distribution of this species and provide the opportunity to assess …
large part of the worldwide distribution of this species and provide the opportunity to assess …
Reticulation, divergence, and the phylogeography–phylogenetics continuum
Phylogeography, and its extensions into comparative phylogeography, have their roots in
the layering of gene trees across geography, a paradigm that was greatly facilitated by the …
the layering of gene trees across geography, a paradigm that was greatly facilitated by the …
The consequences of not accounting for background selection in demographic inference
GB Ewing, JD Jensen - Molecular ecology, 2016 - Wiley Online Library
Recently, there has been increased awareness of the role of background selection (BGS) in
both data analysis and modelling advances. However, BGS is still difficult to take into …
both data analysis and modelling advances. However, BGS is still difficult to take into …
[HTML][HTML] New insights on water buffalo genomic diversity and post-domestication migration routes from medium density SNP chip data
L Colli, M Milanesi, E Vajana, D Iamartino… - Frontiers in …, 2018 - frontiersin.org
The domestic water buffalo is native to the Asian continent but through historical migrations
and recent importations, nowadays has a worldwide distribution. The two types of water …
and recent importations, nowadays has a worldwide distribution. The two types of water …
Discoal: flexible coalescent simulations with selection
AD Kern, DR Schrider - Bioinformatics, 2016 - academic.oup.com
Here we describe discoal, a coalescent simulator able to generate population samples that
include selective sweeps in a feature-rich, flexible manner. discoal can perform simulations …
include selective sweeps in a feature-rich, flexible manner. discoal can perform simulations …
[PDF][PDF] Marcadores moleculares na era genômica: metodologias e aplicações
A arte da capa desta obra foi desenhada a mão livre por Daniela Quinsani, mestre em
Genética e Biologia Molecular (Programa de Pós-Graduação em Genética e Biologia …
Genética e Biologia Molecular (Programa de Pós-Graduação em Genética e Biologia …
The population genomics of rapid adaptation: disentangling signatures of selection and demography in white sands lizards
Understanding the process of adaptation during rapid environmental change remains one of
the central focal points of evolutionary biology. The recently formed White Sands system of …
the central focal points of evolutionary biology. The recently formed White Sands system of …