Diversity in Genetic In Vivo Methods for Protein-Protein Interaction Studies: from the Yeast Two-Hybrid System to the Mammalian Split-Luciferase System

B Stynen, H Tournu, J Tavernier… - … and molecular biology …, 2012 - Am Soc Microbiol
The yeast two-hybrid system pioneered the field of in vivo protein-protein interaction
methods and undisputedly gave rise to a palette of ingenious techniques that are constantly …

Current experimental methods for characterizing protein–protein interactions

M Zhou, Q Li, R Wang - ChemMedChem, 2016 - Wiley Online Library
Protein molecules often interact with other partner protein molecules in order to execute their
vital functions in living organisms. Characterization of protein–protein interactions thus plays …

[HTML][HTML] Systematic functional prioritization of protein posttranslational modifications

P Beltrao, V Albanèse, LR Kenner, DL Swaney… - Cell, 2012 - cell.com
Protein function is often regulated by posttranslational modifications (PTMs), and recent
advances in mass spectrometry have resulted in an exponential increase in PTM …

Controllable genome editing with split-engineered base editors

KN Berríos, NH Evitt, RA DeWeerd, D Ren… - Nature chemical …, 2021 - nature.com
DNA deaminase enzymes play key roles in immunity and have recently been harnessed for
their biotechnological applications. In base editors (BEs), the combination of DNA …

Dynamic protein assembly by programmable DNA strand displacement

RP Chen, D Blackstock, Q Sun, W Chen - Nature Chemistry, 2018 - nature.com
Inspired by the remarkable ability of natural protein switches to sense and respond to a wide
range of environmental queues, here we report a strategy to engineer synthetic protein …

An infrared reporter to detect spatiotemporal dynamics of protein-protein interactions

E Tchekanda, D Sivanesan, SW Michnick - Nature methods, 2014 - nature.com
We report a protein-fragment complementation assay (PCA) based on the engineered
Deinococcus radiodurans infrared fluorescent protein IFP1. 4. Unlike previous fluorescent …

Protein-fragment complementation assays for large-scale analysis of protein–protein interactions

E Blaszczak, N Lazarewicz, A Sudevan… - Biochemical Society …, 2021 - portlandpress.com
Protein–protein interactions (PPIs) orchestrate nearly all biological processes. They are also
considered attractive drug targets for treating many human diseases, including cancers and …

A method for high‐throughput production of sequence‐verified DNA libraries and strain collections

JD Smith, U Schlecht, W Xu, S Suresh… - Molecular systems …, 2017 - embopress.org
The low costs of array‐synthesized oligonucleotide libraries are empowering rapid
advances in quantitative and synthetic biology. However, high synthesis error rates, uneven …

[HTML][HTML] Extracting insight from noisy cellular networks

CR Landry, ED Levy, D Abd Rabbo, K Tarassov… - Cell, 2013 - cell.com
Network biologists attempt to extract meaningful relationships among genes or their
products from very noisy data. We argue that what we categorize as noisy data may …

Protein interaction perturbation profiling at amino-acid resolution

J Woodsmith, L Apelt, V Casado-Medrano, Z Özkan… - Nature …, 2017 - nature.com
The identification of genomic variants in healthy and diseased individuals continues to
rapidly outpace our ability to functionally annotate these variants. Techniques that both …