Naturally occurring modified ribonucleosides

PJ McCown, A Ruszkowska, CN Kunkler… - Wiley …, 2020 - Wiley Online Library
The chemical identity of RNA molecules beyond the four standard ribonucleosides has
fascinated scientists since pseudouridine was characterized as the “fifth” ribonucleotide in …

Transfer RNA modification enzymes from thermophiles and their modified nucleosides in tRNA

H Hori, T Kawamura, T Awai, A Ochi, R Yamagami… - Microorganisms, 2018 - mdpi.com
To date, numerous modified nucleosides in tRNA as well as tRNA modification enzymes
have been identified not only in thermophiles but also in mesophiles. Because most …

[图书][B] DNA and RNA modification enzymes: structure, mechanism, function and evolution

H Grosjean - 2009 - taylorfrancis.com
This volume is a timely and comprehensive description of the many facets of DNA and RNA
modification-editing processes and to some extent repair mechanisms. Each chapter offers …

A subclass of archaeal U8-tRNA sulfurases requires a [4Fe–4S] cluster for catalysis

N He, J Zhou, O Bimai, J Oltmanns… - Nucleic Acids …, 2022 - academic.oup.com
Sulfuration of uridine 8, in bacterial and archaeal tRNAs, is catalyzed by enzymes formerly
known as ThiI, but renamed here TtuI. Two different classes of TtuI proteins, which possess a …

Formation of the conserved pseudouridine at position 55 in archaeal tRNA

M Roovers, C Hale, C Tricot, MP Terns… - Nucleic acids …, 2006 - academic.oup.com
Pseudouridine (Ψ) located at position 55 in tRNA is a nearly universally conserved RNA
modification found in all three domains of life. This modification is catalyzed by TruB in …

Post-transcriptional modifications of conserved nucleotides in the T-loop of tRNA: a tale of functional convergent evolution

M Roovers, L Droogmans, H Grosjean - Genes, 2021 - mdpi.com
The high conservation of nucleotides of the T-loop, including their chemical identity, are
hallmarks of tRNAs from organisms belonging to the three Domains of Life. These structural …

Transfer RNA modification enzymes with a thiouridine synthetase, methyltransferase and pseudouridine synthase (THUMP) domain and the nucleosides they produce …

H Hori - Genes, 2023 - mdpi.com
The existence of the thiouridine synthetase, methyltransferase and pseudouridine synthase
(THUMP) domain was originally predicted by a bioinformatic study. Since the prediction of …

Crystal structure of archaeal tRNA(m1G37)methyltransferase aTrm5

S Goto‐Ito, T Ito, R Ishii, Y Muto… - Proteins: Structure …, 2008 - Wiley Online Library
Methylation of the N1 atom of guanosine at position 37 in tRNA, the position 3′‐adjacent to
the anticodon, generates the modified nucleoside m1G37. In archaea and eukaryotes …

Aquifex aeolicus tRNA (N2, N2-guanine)-dimethyltransferase (Trm1) catalyzes transfer of methyl groups not only to guanine 26 but also to guanine 27 in tRNA

T Awai, S Kimura, C Tomikawa, A Ochi… - Journal of Biological …, 2009 - ASBMB
Transfer RNA (N 2, N 2-guanine)-dimethyltransferase (Trm1) catalyzes N 2, N 2-
dimethylguanine formation at position 26 (m 2 2 G26) in tRNA. In the reaction, N 2-guanine …

Activation mode of the eukaryotic m2G10 tRNA methyltransferase Trm11 by its partner protein Trm112

G Bourgeois, J Marcoux, JM Saliou… - Nucleic acids …, 2017 - academic.oup.com
Post-transcriptional and post-translational modifications of factors involved in translation are
very important for the control and accuracy of protein biosynthesis. Among these factors …