Best practices in metabarcoding of fungi: from experimental design to results
The development of high‐throughput sequencing (HTS) technologies has greatly improved
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …
Ribosome biogenesis factors—from names to functions
K Dörner, C Ruggeri, I Zemp, U Kutay - The EMBO journal, 2023 - embopress.org
The assembly of ribosomal subunits is a highly orchestrated process that involves a huge
cohort of accessory factors. Most eukaryotic ribosome biogenesis factors were first identified …
cohort of accessory factors. Most eukaryotic ribosome biogenesis factors were first identified …
Unambiguous identification of fungi: where do we stand and how accurate and precise is fungal DNA barcoding?
True fungi (Fungi) and fungus-like organisms (eg Mycetozoa, Oomycota) constitute the
second largest group of organisms based on global richness estimates, with around 3 …
second largest group of organisms based on global richness estimates, with around 3 …
Microbial diversity drives carbon use efficiency in a model soil
Empirical evidence for the response of soil carbon cycling to the combined effects of
warming, drought and diversity loss is scarce. Microbial carbon use efficiency (CUE) plays a …
warming, drought and diversity loss is scarce. Microbial carbon use efficiency (CUE) plays a …
[HTML][HTML] ITS alchemy: on the use of ITS as a DNA marker in fungal ecology
H Kauserud - Fungal Ecology, 2023 - Elsevier
High throughput sequencing of PCR amplicons derived from environmental DNA (aka DNA
metabarcoding) has become an integral part of fungal ecology, enabling in-depth …
metabarcoding) has become an integral part of fungal ecology, enabling in-depth …
The diversity and distribution of endophytes across biomes, plant phylogeny and host tissues: how far have we come and where do we go from here?
JG Harrison, EA Griffin - Environmental microbiology, 2020 - Wiley Online Library
The interiors of plants are colonized by diverse microorganisms that are referred to as
endophytes. Endophytes have received much attention over the past few decades, yet many …
endophytes. Endophytes have received much attention over the past few decades, yet many …
Genetic determinants of endophytism in the Arabidopsis root mycobiome
F Mesny, S Miyauchi, T Thiergart, B Pickel… - Nature …, 2021 - nature.com
The roots of Arabidopsis thaliana host diverse fungal communities that affect plant health
and disease states. Here, we sequence the genomes of 41 fungal isolates representative of …
and disease states. Here, we sequence the genomes of 41 fungal isolates representative of …
Metschnikowia pulcherrima and Related Pulcherrimin-Producing Yeasts: Fuzzy Species Boundaries and Complex Antimicrobial Antagonism
M Sipiczki - Microorganisms, 2020 - mdpi.com
Yeasts affiliated with the Metschnikowia pulcherrima clade (subclade) of the large
ascomycetous genus Metschnikowia frequently turn out to produce the characteristic …
ascomycetous genus Metschnikowia frequently turn out to produce the characteristic …
Does intraspecific variation in rDNA copy number affect analysis of microbial communities?
Amplicon sequencing of partial regions of the ribosomal RNA loci (rDNA) is widely used to
profile microbial communities. However, the rDNA is dynamic and can exhibit substantial …
profile microbial communities. However, the rDNA is dynamic and can exhibit substantial …
Combining whole-genome shotgun sequencing and rRNA gene amplicon analyses to improve detection of microbe–microbe interaction networks in plant leaves
J Regalado, DS Lundberg, O Deusch… - The ISME …, 2020 - academic.oup.com
Microorganisms from all domains of life establish associations with plants. Although some
harm the plant, others antagonize pathogens or prime the plant immune system, support the …
harm the plant, others antagonize pathogens or prime the plant immune system, support the …