Stochastic thermodynamics, fluctuation theorems and molecular machines

U Seifert - Reports on progress in physics, 2012 - iopscience.iop.org
Stochastic thermodynamics as reviewed here systematically provides a framework for
extending the notions of classical thermodynamics such as work, heat and entropy …

Large deviations of the empirical flow for continuous time Markov chains

L Bertini, A Faggionato, D Gabrielli - Annales de l'IHP Probabilités et …, 2015 - numdam.org
We consider a continuous time Markov chain on a countable state space and prove a joint
large deviation principle for the empirical measure and the empirical flow, which accounts …

[HTML][HTML] Flows, currents, and cycles for Markov chains: large deviation asymptotics

L Bertini, A Faggionato, D Gabrielli - Stochastic Processes and their …, 2015 - Elsevier
We consider a continuous time Markov chain on a countable state space. We prove a joint
large deviation principle (LDP) of the empirical measure and current in the limit of large time …

Multivariate fluctuation relations for currents

P Gaspard - New Journal of Physics, 2013 - iopscience.iop.org
This paper is devoted to multivariate fluctuation relations for all the currents flowing across
an open system in contact with several reservoirs at different temperatures and chemical …

Effective fluctuation and response theory

M Polettini, M Esposito - Journal of Statistical Physics, 2019 - Springer
The so-called fluctuation theorems pushed the study of systems far beyond equilibrium,
whose response to thermodynamic forces (affinities) is characterized by the reciprocal and …

Fluctuation-preserving coarse graining for biochemical systems

B Altaner, J Vollmer - Physical review letters, 2012 - APS
Finite stochastic Markov models play a major role in modeling biological systems. Such
models are a coarse-grained description of the underlying microscopic dynamics and can …

Fluctuating currents in stochastic thermodynamics. I. Gauge invariance of asymptotic statistics

A Wachtel, J Vollmer, B Altaner - Physical Review E, 2015 - APS
Stochastic thermodynamics uses Markovian jump processes to model random transitions
between observable mesoscopic states. Physical currents are obtained from antisymmetric …

Network representations of nonequilibrium steady states: Cycle decompositions, symmetries, and dominant paths

B Altaner, S Grosskinsky, S Herminghaus… - Physical Review E …, 2012 - APS
Nonequilibrium steady states of Markov processes give rise to nontrivial cyclic probability
fluxes. Cycle decompositions of the steady state offer an effective description of such fluxes …

Transient fluctuation theorems for the currents and initial equilibrium ensembles

M Polettini, M Esposito - Journal of Statistical Mechanics: Theory …, 2014 - iopscience.iop.org
We prove a transient fluctuation theorem for the currents for continuous-time Markov jump
processes with stationary rates, generalizing an asymptotic result by Andrieux and Gaspard …

Full counting statistics and fluctuation theorem for the currents in the discrete model of Feynman's ratchet

YX Wu, J Gu, HT Quan - Physical Review E, 2022 - APS
We provide a detailed investigation of the fluctuations of the currents in the discrete model of
Feynman's ratchet proposed by Jarzynski and Mazonka in 1999. Two macroscopic currents …