Stochastic thermodynamics, fluctuation theorems and molecular machines
U Seifert - Reports on progress in physics, 2012 - iopscience.iop.org
Stochastic thermodynamics as reviewed here systematically provides a framework for
extending the notions of classical thermodynamics such as work, heat and entropy …
extending the notions of classical thermodynamics such as work, heat and entropy …
Large deviations of the empirical flow for continuous time Markov chains
L Bertini, A Faggionato, D Gabrielli - Annales de l'IHP Probabilités et …, 2015 - numdam.org
We consider a continuous time Markov chain on a countable state space and prove a joint
large deviation principle for the empirical measure and the empirical flow, which accounts …
large deviation principle for the empirical measure and the empirical flow, which accounts …
[HTML][HTML] Flows, currents, and cycles for Markov chains: large deviation asymptotics
L Bertini, A Faggionato, D Gabrielli - Stochastic Processes and their …, 2015 - Elsevier
We consider a continuous time Markov chain on a countable state space. We prove a joint
large deviation principle (LDP) of the empirical measure and current in the limit of large time …
large deviation principle (LDP) of the empirical measure and current in the limit of large time …
Multivariate fluctuation relations for currents
P Gaspard - New Journal of Physics, 2013 - iopscience.iop.org
This paper is devoted to multivariate fluctuation relations for all the currents flowing across
an open system in contact with several reservoirs at different temperatures and chemical …
an open system in contact with several reservoirs at different temperatures and chemical …
Effective fluctuation and response theory
M Polettini, M Esposito - Journal of Statistical Physics, 2019 - Springer
The so-called fluctuation theorems pushed the study of systems far beyond equilibrium,
whose response to thermodynamic forces (affinities) is characterized by the reciprocal and …
whose response to thermodynamic forces (affinities) is characterized by the reciprocal and …
Fluctuation-preserving coarse graining for biochemical systems
B Altaner, J Vollmer - Physical review letters, 2012 - APS
Finite stochastic Markov models play a major role in modeling biological systems. Such
models are a coarse-grained description of the underlying microscopic dynamics and can …
models are a coarse-grained description of the underlying microscopic dynamics and can …
Fluctuating currents in stochastic thermodynamics. I. Gauge invariance of asymptotic statistics
A Wachtel, J Vollmer, B Altaner - Physical Review E, 2015 - APS
Stochastic thermodynamics uses Markovian jump processes to model random transitions
between observable mesoscopic states. Physical currents are obtained from antisymmetric …
between observable mesoscopic states. Physical currents are obtained from antisymmetric …
Network representations of nonequilibrium steady states: Cycle decompositions, symmetries, and dominant paths
Nonequilibrium steady states of Markov processes give rise to nontrivial cyclic probability
fluxes. Cycle decompositions of the steady state offer an effective description of such fluxes …
fluxes. Cycle decompositions of the steady state offer an effective description of such fluxes …
Transient fluctuation theorems for the currents and initial equilibrium ensembles
M Polettini, M Esposito - Journal of Statistical Mechanics: Theory …, 2014 - iopscience.iop.org
We prove a transient fluctuation theorem for the currents for continuous-time Markov jump
processes with stationary rates, generalizing an asymptotic result by Andrieux and Gaspard …
processes with stationary rates, generalizing an asymptotic result by Andrieux and Gaspard …
Full counting statistics and fluctuation theorem for the currents in the discrete model of Feynman's ratchet
We provide a detailed investigation of the fluctuations of the currents in the discrete model of
Feynman's ratchet proposed by Jarzynski and Mazonka in 1999. Two macroscopic currents …
Feynman's ratchet proposed by Jarzynski and Mazonka in 1999. Two macroscopic currents …