In-cell structural biology by NMR: the benefits of the atomic scale

FX Theillet - Chemical reviews, 2022 - ACS Publications
In-cell structural biology aims at extracting structural information about proteins or nucleic
acids in their native, cellular environment. This emerging field holds great promise and is …

Cryo-EM in molecular and cellular biology

HR Saibil - Molecular Cell, 2022 - cell.com
This review summarizes the current state of methods and results achievable by cryo-electron
microscopy (cryo-EM) imaging for molecular, cell, and structural biologists who wish to …

Improvement of cryo-EM maps by simultaneous local and non-local deep learning

J He, T Li, SY Huang - Nature Communications, 2023 - nature.com
Cryo-EM has emerged as the most important technique for structure determination of
macromolecular complexes. However, raw cryo-EM maps often exhibit loss of contrast at …

Accurate prediction of protein structural flexibility by deep learning integrating intricate atomic structures and Cryo-EM density information

X Song, L Bao, C Feng, Q Huang, F Zhang… - Nature …, 2024 - nature.com
The dynamics of proteins are crucial for understanding their mechanisms. However,
computationally predicting protein dynamic information has proven challenging. Here, we …

Model building of protein complexes from intermediate-resolution cryo-EM maps with deep learning-guided automatic assembly

J He, P Lin, J Chen, H Cao, SY Huang - Nature Communications, 2022 - nature.com
Advances in microscopy instruments and image processing algorithms have led to an
increasing number of cryo-electron microscopy (cryo-EM) maps. However, building accurate …

Low-temperature plasma for biology, hygiene, and medicine: Perspective and roadmap

M Laroussi, S Bekeschus, M Keidar… - … on Radiation and …, 2021 - ieeexplore.ieee.org
Plasma, the fourth and most pervasive state of matter in the visible universe, is a fascinating
medium that is connected to the beginning of our universe itself. Man-made plasmas are at …

Stacked binding of a PET ligand to Alzheimer's tau paired helical filaments

GE Merz, MJ Chalkley, SK Tan, E Tse, J Lee… - Nature …, 2023 - nature.com
Accumulation of filamentous aggregates of tau protein in the brain is a pathological hallmark
of Alzheimer's disease (AD) and many other neurodegenerative tauopathies. The filaments …

Residue-wise local quality estimation for protein models from cryo-EM maps

G Terashi, X Wang… - Nature …, 2022 - nature.com
An increasing number of protein structures are being determined by cryogenic electron
microscopy (cryo-EM). Although the resolution of determined cryo-EM density maps is …

Accurate model and ensemble refinement using cryo-electron microscopy maps and Bayesian inference

SE Hoff, FE Thomasen, K Lindorff-Larsen… - PLOS Computational …, 2024 - journals.plos.org
Converting cryo-electron microscopy (cryo-EM) data into high-quality structural models is a
challenging problem of outstanding importance. Current refinement methods often generate …

Cryo-electron microscopy of adeno-associated virus

SM Stagg, C Yoshioka, O Davulcu… - Chemical …, 2022 - ACS Publications
Adeno-associated virus (AAV) has a single-stranded DNA genome encapsidated in a small
icosahedrally symmetric protein shell with 60 subunits. AAV is the leading delivery vector in …