Scaling up: A guide to high‐throughput genomic approaches for biodiversity analysis
TM Porter, M Hajibabaei - Molecular ecology, 2018 - Wiley Online Library
The purpose of this review is to present the most common and emerging DNA‐based
methods used to generate data for biodiversity and biomonitoring studies. As environmental …
methods used to generate data for biodiversity and biomonitoring studies. As environmental …
A new way to contemplate Darwin's tangled bank: how DNA barcodes are reconnecting biodiversity science and biomonitoring
Encompassing the breadth of biodiversity in biomonitoring programmes has been frustrated
by an inability to simultaneously identify large numbers of species accurately and in a timely …
by an inability to simultaneously identify large numbers of species accurately and in a timely …
Over 2.5 million COI sequences in GenBank and growing
TM Porter, M Hajibabaei - PloS one, 2018 - journals.plos.org
The increasing popularity of cytochrome c oxidase subunit 1 (COI) DNA metabarcoding
warrants a careful look at the underlying reference databases used to make high-throughput …
warrants a careful look at the underlying reference databases used to make high-throughput …
Automated high throughput animal CO1 metabarcode classification
TM Porter, M Hajibabaei - Scientific Reports, 2018 - nature.com
We introduce a method for assigning names to CO1 metabarcode sequences with
confidence scores in a rapid, high-throughput manner. We compiled nearly 1 million CO1 …
confidence scores in a rapid, high-throughput manner. We compiled nearly 1 million CO1 …
Peering into the darkness: DNA barcoding reveals surprisingly high diversity of unknown species of Diptera (Insecta) in Germany
Simple Summary Roughly two-thirds of the insect species described from Germany belong
to the orders Diptera (flies) or Hymenoptera (wasps, bees, ants and sawflies). However, both …
to the orders Diptera (flies) or Hymenoptera (wasps, bees, ants and sawflies). However, both …
Testing the potential of a ribosomal 16S marker for DNA metabarcoding of insects
Cytochrome c oxidase I (COI) is a powerful marker for DNA barcoding of animals, with good
taxonomic resolution and a large reference database. However, when used for DNA …
taxonomic resolution and a large reference database. However, when used for DNA …
COI metabarcoding primer choice affects richness and recovery of indicator taxa in freshwater systems
Mixed community or environmental DNA marker gene sequencing has become a commonly
used technique for biodiversity analyses in freshwater systems. Many cytochrome c oxidase …
used technique for biodiversity analyses in freshwater systems. Many cytochrome c oxidase …
Developing a non-destructive metabarcoding protocol for detection of pest insects in bulk trap catches
Metabarcoding has the potential to revolutionise insect surveillance by providing high-
throughput and cost-effective species identification of all specimens within mixed trap …
throughput and cost-effective species identification of all specimens within mixed trap …
Metabarcoding of marine environmental DNA based on mitochondrial and nuclear genes
We establish the new approach of environmental DNA (eDNA) analyses for the North Sea.
Our study uses a multigene approach, including the mitochondrial cytochrome-c-oxidase …
Our study uses a multigene approach, including the mitochondrial cytochrome-c-oxidase …
Species from feces: order-wide identification of Chiroptera from guano and other non-invasive genetic samples
Bat guano is a relatively untapped reservoir of information, having great utility as a DNA
source because it is often available at roosts even when bats are not and is an easy type of …
source because it is often available at roosts even when bats are not and is an easy type of …