Beyond horizontal gene transfer: the role of plasmids in bacterial evolution
J Rodríguez-Beltrán, J DelaFuente… - Nature Reviews …, 2021 - nature.com
Plasmids have a key role in bacterial ecology and evolution because they mobilize
accessory genes by horizontal gene transfer. However, recent studies have revealed that …
accessory genes by horizontal gene transfer. However, recent studies have revealed that …
Replication mechanisms of circular ssDNA plant viruses and their potential implication in viral gene expression regulation
M Bonnamy, S Blanc, Y Michalakis - mbio, 2023 - Am Soc Microbiol
The replication of members of the two circular single-stranded DNA (ssDNA) virus families
Geminiviridae and Nanoviridae, the only ssDNA viruses infecting plants, is believed to be …
Geminiviridae and Nanoviridae, the only ssDNA viruses infecting plants, is believed to be …
[HTML][HTML] Duplicated antibiotic resistance genes reveal ongoing selection and horizontal gene transfer in bacteria
Horizontal gene transfer (HGT) and gene duplication are often considered as separate
mechanisms driving the evolution of new functions. However, the mobile genetic elements …
mechanisms driving the evolution of new functions. However, the mobile genetic elements …
High-throughput functional variant screens via in vivo production of single-stranded DNA
MG Schubert, DB Goodman… - Proceedings of the …, 2021 - National Acad Sciences
Creating and characterizing individual genetic variants remains limited in scale, compared
to the tremendous variation both existing in nature and envisioned by genome engineers …
to the tremendous variation both existing in nature and envisioned by genome engineers …
Gene amplification, laboratory evolution, and biosensor screening reveal MucK as a terephthalic acid transporter in Acinetobacter baylyi ADP1
Microbial terephthalic acid (TPA) catabolic pathways are conserved among the few bacteria
known to turnover this xenobiotic aromatic compound. However, to date there are few …
known to turnover this xenobiotic aromatic compound. However, to date there are few …
Genomic insights into linezolid-resistant Enterococci revealed its evolutionary diversity and poxtA copy number heterogeneity
Objectives This study aimed to determine the molecular mechanisms of linezolid-resistant
enterococci (LRE) in swine slaughterhouses in China and apply the “One Health” …
enterococci (LRE) in swine slaughterhouses in China and apply the “One Health” …
[HTML][HTML] Microfluidics for long-term single-cell time-lapse microscopy: Advances and applications
Cells are inherently dynamic, whether they are responding to environmental conditions or
simply at equilibrium, with biomolecules constantly being made and destroyed. Due to their …
simply at equilibrium, with biomolecules constantly being made and destroyed. Due to their …
[HTML][HTML] Biochar-derived dissolved organic matters influencing bacterium characteristics during biodegradation of sulfamethoxazole and chloramphenicol under …
F Yang, Y Xue, Y Gao, Q Zhu, C Wang, H Sun - Biochar, 2023 - Springer
The influence of biochar-released dissolved organic matter (BDOM) on the transcription of
gene (DEG) in Pseudomonas stutzeri and Shewanella putrefacien during sulfamethoxazole …
gene (DEG) in Pseudomonas stutzeri and Shewanella putrefacien during sulfamethoxazole …
[HTML][HTML] Local genetic context shapes the function of a gene regulatory network
A Nagy-Staron, K Tomasek, C Caruso Carter… - Elife, 2021 - elifesciences.org
Gene expression levels are influenced by multiple coexisting molecular mechanisms. Some
of these interactions such as those of transcription factors and promoters have been studied …
of these interactions such as those of transcription factors and promoters have been studied …
Engineering plasmid copy number heterogeneity for dynamic microbial adaptation
Natural microbial populations exploit phenotypic heterogeneity for survival and adaptation.
However, in engineering biology, limiting the sources of variability is a major focus. Here we …
However, in engineering biology, limiting the sources of variability is a major focus. Here we …