Mapping genes for complex traits in domestic animals and their use in breeding programmes

ME Goddard, BJ Hayes - Nature Reviews Genetics, 2009 - nature.com
Genome-wide panels of SNPs have recently been used in domestic animal species to map
and identify genes for many traits and to select genetically desirable livestock. This has led …

Copy number variation in domestication

ZN Lye, MD Purugganan - Trends in Plant Science, 2019 - cell.com
Domesticated plants have long served as excellent models for studying evolution. Many
genes and mutations underlying important domestication traits have been identified, and …

Genetic landscape of esophageal squamous cell carcinoma

YB Gao, ZL Chen, JG Li, XD Hu, XJ Shi, ZM Sun… - Nature …, 2014 - nature.com
Esophageal squamous cell carcinoma (ESCC) is one of the deadliest cancers. We
performed exome sequencing on 113 tumor-normal pairs, yielding a mean of 82 non-silent …

Rethinking dog domestication by integrating genetics, archeology, and biogeography

G Larson, EK Karlsson, A Perri… - Proceedings of the …, 2012 - National Acad Sciences
The dog was the first domesticated animal but it remains uncertain when the domestication
process began and whether it occurred just once or multiple times across the Northern …

Genome sequencing of 2000 canids by the Dog10K consortium advances the understanding of demography, genome function and architecture

JRS Meadows, JM Kidd, GD Wang, HG Parker… - Genome biology, 2023 - Springer
Abstract Background The international Dog10K project aims to sequence and analyze
several thousand canine genomes. Incorporating 20× data from 1987 individuals, including …

A simple genetic architecture underlies morphological variation in dogs

AR Boyko, P Quignon, L Li, JJ Schoenebeck… - PLoS …, 2010 - journals.plos.org
Domestic dogs exhibit tremendous phenotypic diversity, including a greater variation in body
size than any other terrestrial mammal. Here, we generate a high density map of canine …

Copy number variation of individual cattle genomes using next-generation sequencing

DM Bickhart, Y Hou, SG Schroeder, C Alkan… - Genome …, 2012 - genome.cshlp.org
Copy number variations (CNVs) affect a wide range of phenotypic traits; however, CNVs in
or near segmental duplication regions are often intractable. Using a read depth approach …

Efficient mapping of mendelian traits in dogs through genome-wide association

EK Karlsson, I Baranowska, CM Wade… - Nature …, 2007 - nature.com
With several hundred genetic diseases and an advantageous genome structure, dogs are
ideal for mapping genes that cause disease. Here we report the development of a …

An Expressed Fgf4 Retrogene Is Associated with Breed-Defining Chondrodysplasia in Domestic Dogs

HG Parker, BM VonHoldt, P Quignon, EH Margulies… - Science, 2009 - science.org
Retrotransposition of processed mRNAs is a common source of novel sequence acquired
during the evolution of genomes. Although the vast majority of retroposed gene copies, or …

Inherited defects in pedigree dogs. Part 1: disorders related to breed standards

L Asher, G Diesel, JF Summers, PD McGreevy… - The Veterinary …, 2009 - Elsevier
The United Kingdom pedigree-dog industry has faced criticism because certain aspects of
dog conformation stipulated in the UK Kennel Club breed standards have a detrimental …