DNA copy number changes define spatial patterns of heterogeneity in colorectal cancer

S Mamlouk, LH Childs, D Aust, D Heim… - Nature …, 2017 - nature.com
Genetic heterogeneity between and within tumours is a major factor determining cancer
progression and therapy response. Here we examined DNA sequence and DNA copy …

SFPQ depletion is synthetically lethal with BRAFV600E in colorectal cancer cells

K Klotz-Noack, B Klinger, M Rivera, N Bublitz, F Uhlitz… - Cell reports, 2020 - cell.com
Oncoproteins such as the BRAF V600E kinase endow cancer cells with malignant
properties, but they also create unique vulnerabilities. Targeting of BRAF V600E-driven …

Malignant transformation and genetic alterations are uncoupled in early colorectal cancer progression

S Mamlouk, T Simon, L Tomás, DC Wedge, A Arnold… - BMC biology, 2020 - Springer
Background Colorectal cancer (CRC) development is generally accepted as a sequential
process, with genetic mutations determining phenotypic tumor progression. However …

Serial analysis of gene mutations and gene expression during first-line chemotherapy against metastatic colorectal cancer: identification of potentially actionable …

J Kumbrink, L Bohlmann, S Mamlouk, T Redmer… - Cancers, 2022 - mdpi.com
Simple Summary The emergence of resistant cells remains a major obstacle for
chemotherapy treatment of metastatic colorectal cancers. Improvement of the therapeutic …

A semantic framework supporting multilayer networks analysis for rare diseases

N Capuano, P Foggia, L Greco… - International Journal on …, 2022 - igi-global.com
Understanding the role played by genetic variations in diseases, exploring genomic variants
and discovering disease-associated loci are among the most pressing challenges of …

Variant information systems for precision oncology

J Starlinger, S Pallarz, J Ševa, D Rieke, C Sers… - BMC Medical Informatics …, 2018 - Springer
Background The decreasing cost of obtaining high-quality calls of genomic variants and the
increasing availability of clinically relevant data on such variants are important drivers for …

A Linked Data Application for Harmonizing Heterogeneous Biomedical Information

N Capuano, P Foggia, L Greco, P Ritrovato - Applied Sciences, 2022 - mdpi.com
In the biomedical field, there is an ever-increasing number of large, fragmented, and isolated
data sources stored in databases and ontologies that use heterogeneous formats and poorly …

A Client-Cloud-Chain Data Annotation System of Internet of Things for Semi-Supervised Missing Data

C Yu, Y Zhou, X Cui - Mathematics, 2023 - mdpi.com
With continuous progress in science and technology, a large amount of data are produced in
all fields of the world at anytime and anywhere. These data are unmarked and lack marking …

Computer-aided big healthcare data (BHD) analytics

TA Shaikh, R Ali - Big Data Analytics and Intelligence: A Perspective …, 2020 - emerald.com
Tremendous measure of data lakes with the exponential mounting rate is produced by the
present healthcare sector. The information from differing sources like electronic wellbeing …

A comparative analysis of biological data integration systems famous for data exploitation and knowledge discovery

O Irshad, MUG Khan - Current Bioinformatics, 2021 - ingentaconnect.com
Integrating heterogeneous biological databases for unveiling the new intra-molecular and
inter-molecular attributes, behaviors, and relationships in the human cellular system has …