Fluorescence resonance energy transfer in near-infrared fluorescent oligonucleotide probes for detecting protein–DNA interactions

S Zhang, V Metelev, D Tabatadze… - Proceedings of the …, 2008 - National Acad Sciences
Optical imaging in the near-infrared (NIR) range enables detecting ligand-receptor
interactions and enzymatic activity in vivo due to lower scattering and absorption of NIR …

Self-calibrating viscosity probes: Design and subcellular localization

M Dakanali, TH Do, A Horn, A Chongchivivat… - Bioorganic & medicinal …, 2012 - Elsevier
We describe the design, synthesis and fluorescence profiles of new self-calibrating viscosity
dyes in which a coumarin (reference fluorophore) has been covalently linked with a …

[HTML][HTML] Fluorocarbons enhance intracellular delivery of short STAT3-sensors and enable specific imaging

V Metelev, S Zhang, S Zheng, ATN Kumar… - Theranostics, 2017 - ncbi.nlm.nih.gov
Short oligonucleotide sequences are now being widely investigated for their potential
therapeutic properties. The modification of oligonucleotide termini with short fluorinated …

Self-neutralizing oligonucleotides with enhanced cellular uptake

I Yanachkov, B Zavizion, V Metelev… - Organic & …, 2017 - pubs.rsc.org
There is tremendous potential for oligonucleotide (ON) therapeutics, but low cellular
penetration due to their polyanionic nature is a major obstacle. We addressed this problem …

Near-Infrared Fluorescent Oligodeoxyribonucleotide Reporters for Sensing NF-κB DNA Interactions In Vitro

S Zhang, V Metelev, D Tabatadze, P Zamecnik… - …, 2008 - liebertpub.com
Two types of reporters for optical sensing of NF-κB p50 protein-oligodeoxyribonucleotide
(ODN) duplex interactions were designed and compared in vitro. The reporters were based …

[HTML][HTML] Molecular recognition of surface-immobilized carbohydrates by a synthetic lectin

M Rauschenberg, EC Fritz, C Schulz… - Beilstein Journal of …, 2014 - beilstein-journals.org
The molecular recognition of carbohydrates and proteins mediates a wide range of
physiological processes and the development of synthetic carbohydrate receptors …

Hairpin-like fluorescent probe for imaging of NF-κB transcription factor activity

V Metelev, S Zhang, D Tabatadze… - Bioconjugate …, 2011 - ACS Publications
Three oligodeoxyribonucleotides (ODN) covalently labeled with near-infrared (NIR)
fluorochromes were synthesized and characterized with a goal of comparing in vitro a …

[HTML][HTML] Imaging NF-κB activity in a murine model of early stage diabetes

T Taghian, VG Metelev, S Zhang… - FASEB journal: official …, 2020 - ncbi.nlm.nih.gov
Early pro-inflammatory signaling in the endocrine pancreas involves activation of NF-κB,
which is believed to be important for determining the ultimate fate of β− cells and hence …

Sensing of transcription factor binding via cyanine dye pair fluorescence lifetime changes

AA Bogdanov, V Metelev, S Zhang… - Molecular …, 2012 - pubs.rsc.org
We designed and synthesized sensors for imaging transcription factor–DNA interactions
using a complementary pair of 21-base pair long oligonucleotides (ODNs) carrying two …

The three-dimensional context of a double helix determines the fluorescence of the internucleoside-tethered pair of fluorophores

V Metelev, S Zhang, D Tabatadze, ATN Kumar… - Molecular …, 2013 - pubs.rsc.org
We report a general phenomenon of the formation of either a fluorescent or an entirely
quenched oligodeoxynucleotide (ODN) duplex system by hybridizing pairs of …