Confluence, synnovation, and depauperons in plant diversification

MJ Donoghue, MJ Sanderson - New Phytologist, 2015 - Wiley Online Library
We review the empirical phylogenetic literature on plant diversification, highlighting
challenges in separating the effects of speciation and extinction, in specifying diversification …

Evolutionary consequences, constraints and potential of polyploidy in plants

H Weiss-Schneeweiss, K Emadzade, TS Jang… - … and genome research, 2013 - karger.com
Polyploidy, the possession of more than 2 complete genomes, is a major force in plant
evolution known to affect the genetic and genomic constitution and the phenotype of an …

Polyploidy: pitfalls and paths to a paradigm

DE Soltis, CJ Visger, DB Marchant… - American journal of …, 2016 - Wiley Online Library
Investigators have long searched for a polyploidy paradigm—rules or principles that might
be common following polyploidization (whole‐genome duplication, WGD). Here we attempt …

The polyploidy revolution then… and now: Stebbins revisited

DE Soltis, CJ Visger, PS Soltis - American journal of botany, 2014 - Wiley Online Library
Polyploidy has long been considered a major force in plant evolution. G. Ledyard Stebbins,
Jr., an architect of the Modern Synthesis, elegantly addressed a broad range of topics, from …

Multiple polyploidization events across Asteraceae with two nested events in the early history revealed by nuclear phylogenomics

CH Huang, C Zhang, M Liu, Y Hu, T Gao… - … Biology and Evolution, 2016 - academic.oup.com
Biodiversity results from multiple evolutionary mechanisms, including genetic variation and
natural selection. Whole-genome duplications (WGDs), or polyploidizations, provide …

Detecting alternatively spliced transcript isoforms from single‐molecule long‐read sequences without a reference genome

X Liu, W Mei, PS Soltis, DE Soltis… - Molecular ecology …, 2017 - Wiley Online Library
Alternative splicing (AS) is a major source of transcript and proteome diversity, but
examining AS in species without well‐annotated reference genomes remains difficult …

Natural pathways to polyploidy in plants and consequences for genome reorganization

A Tayalé, C Parisod - Cytogenetic and genome research, 2013 - karger.com
The last decade highlighted polyploidy as a rampant evolutionary process that triggers
drastic genome reorganization, but much remains to be understood about their causes and …

Replaying the evolutionary tape to investigate subgenome dominance in allopolyploid Brassica napus

KA Bird, CE Niederhuth, S Ou, M Gehan… - New …, 2021 - Wiley Online Library
Allopolyploidisation merges evolutionarily distinct parental genomes (subgenomes) into a
single nucleus. A frequent observation is that one subgenome is 'dominant'over the other …

Genomic Insights into Genetic Diploidization in the Homosporous Fern Adiantum nelumboides

Y Zhong, Y Liu, W Wu, J Chen, C Sun… - Genome biology and …, 2022 - academic.oup.com
Whole-genome duplication has been recognized as a major process in speciation of land
plants, especially in ferns. Whereas genome downsizing contributes greatly to the post …

Genome-wide disruption of gene expression in allopolyploids but not hybrids of rice subspecies

C Xu, Y Bai, X Lin, N Zhao, L Hu, Z Gong… - Molecular biology …, 2014 - academic.oup.com
Hybridization and polyploidization are prominent processes in plant evolution. Hybrids and
allopolyploids typically exhibit radically altered gene expression patterns relative to their …