Probing structure and reaction dynamics of proteins using time-resolved resonance Raman spectroscopy
D Buhrke, P Hildebrandt - Chemical reviews, 2019 - ACS Publications
The mechanistic understanding of protein functions requires insight into the structural and
reaction dynamics. To elucidate these processes, a variety of experimental approaches are …
reaction dynamics. To elucidate these processes, a variety of experimental approaches are …
Reactive molecular dynamics: From small molecules to proteins
M Meuwly - Wiley Interdisciplinary Reviews: Computational …, 2019 - Wiley Online Library
The current status of reactive molecular dynamics (MD) simulations is summarized. Both,
methodological aspects and applications to problems ranging from gas phase reaction …
methodological aspects and applications to problems ranging from gas phase reaction …
High-dimensional potential energy surfaces for molecular simulations: from empiricism to machine learning
An overview of computational methods to describe high-dimensional potential energy
surfaces suitable for atomistic simulations is given. Particular emphasis is put on accuracy …
surfaces suitable for atomistic simulations is given. Particular emphasis is put on accuracy …
Femtosecond X-ray emission study of the spin cross-over dynamics in haem proteins
D Kinschel, C Bacellar, O Cannelli, B Sorokin… - Nature …, 2020 - nature.com
In haemoglobin the change from the low-spin (LS) hexacoordinated haem to the high spin
(HS, S= 2) pentacoordinated domed deoxy-myoglobin (deoxyMb) form upon ligand …
(HS, S= 2) pentacoordinated domed deoxy-myoglobin (deoxyMb) form upon ligand …
The H-NOX protein structure adapts to different mechanisms in sensors interacting with nitric oxide
BK Yoo, SG Kruglik, JC Lambry, I Lamarre… - Chemical …, 2023 - pubs.rsc.org
Some classes of bacteria within phyla possess protein sensors identified as homologous to
the heme domain of soluble guanylate cyclase, the mammalian NO-receptor. Named H-NOX …
the heme domain of soluble guanylate cyclase, the mammalian NO-receptor. Named H-NOX …
Direct observation of subpicosecond vibrational dynamics in photoexcited myoglobin
C Ferrante, E Pontecorvo, G Cerullo, MH Vos… - Nature Chemistry, 2016 - nature.com
Determining the initial pathway for ultrafast energy redistribution within biomolecules is a
challenge, and haem proteins, for which energy can be deposited locally in the haem moiety …
challenge, and haem proteins, for which energy can be deposited locally in the haem moiety …
[HTML][HTML] Observing heme doming in myoglobin with femtosecond X-ray absorption spectroscopy
We report time-resolved X-ray absorption measurements after photolysis of carbonmonoxy
myoglobin performed at the LCLS X-ray free electron laser with nearly 100 fs (FWHM) time …
myoglobin performed at the LCLS X-ray free electron laser with nearly 100 fs (FWHM) time …
[HTML][HTML] Non-conventional force fields for applications in spectroscopy and chemical reaction dynamics
Extensions and improvements of empirical force fields are discussed in view of applications
to computational vibrational spectroscopy and reactive molecular dynamics simulations …
to computational vibrational spectroscopy and reactive molecular dynamics simulations …
Time-resolved resonance Raman spectroscopy: exploring reactive intermediates
SK Sahoo, S Umapathy, AW Parker - Applied Spectroscopy, 2011 - opg.optica.org
The study of reaction mechanisms involves systematic investigations of the correlation
between structure, reactivity, and time. The challenge is to be able to observe the chemical …
between structure, reactivity, and time. The challenge is to be able to observe the chemical …
The transcriptional repressor REV-ERB as a novel target for disease
A Uriz-Huarte, A Date, H Ang, S Ali, HJM Brady… - Bioorganic & Medicinal …, 2020 - Elsevier
REV-ERB is a member of the nuclear receptor superfamily of transcription factors involved in
the regulation of many physiological processes, from circadian rhythm, to immune function …
the regulation of many physiological processes, from circadian rhythm, to immune function …