Telomere-to-telomere Citrullus super-pangenome provides direction for watermelon breeding

Y Zhang, M Zhao, J Tan, M Huang, X Chu, Y Li… - Nature Genetics, 2024 - nature.com
To decipher the genetic diversity within the cucurbit genus Citrullus, we generated telomere-
to-telomere (T2T) assemblies of 27 distinct genotypes, encompassing all seven Citrullus …

Cancer liquid biopsies by Oxford Nanopore Technologies sequencing of cell-free DNA: from basic research to clinical applications

HQ Si, P Wang, F Long, W Zhong, YD Meng, Y Rong… - Molecular Cancer, 2024 - Springer
Liquid biopsies, in particular, analysis of cell-free DNA, are expected to revolutionize the
current landscape of cancer diagnostics and treatment. However, the existing methods for …

Evolutionary origin and population diversity of a cryptic hybrid pathogen

JL Steenwyk, S Knowles, RW Bastos… - Nature …, 2024 - nature.com
Cryptic fungal pathogens pose disease management challenges due to their morphological
resemblance to known pathogens. Here, we investigated the genomes and phenotypes of …

PMAT: an efficient plant mitogenome assembly toolkit using low-coverage HiFi sequencing data

C Bi, F Shen, F Han, Y Qu, J Hou, K Xu, L Xu… - Horticulture …, 2024 - academic.oup.com
Complete mitochondrial genomes (mitogenomes) of plants are valuable resources for
nucleocytoplasmic interactions, plant evolution, and plant cytoplasmic male sterile line …

Near telomere-to-telomere genome of the model plant Physcomitrium patens

G Bi, S Zhao, J Yao, H Wang, M Zhao, Y Sun, X Hou… - Nature Plants, 2024 - nature.com
The model plant Physcomitrium patens has played a pivotal role in enhancing our
comprehension of plant evolution and development. However, the current genome harbours …

Grapevine pangenome facilitates trait genetics and genomic breeding

Z Liu, N Wang, Y Su, Q Long, Y Peng, L Shangguan… - Nature Genetics, 2024 - nature.com
Grapevine breeding is hindered by a limited understanding of the genetic basis of complex
agronomic traits. This study constructs a graph-based pangenome reference (Grapepan v …

Genome and transcriptome of Selaginella kraussiana reveal evolution of root apical meristems in vascular plants

W Liu, G Cai, N Zhai, H Wang, T Tang, Y Zhang… - Current Biology, 2023 - cell.com
The evolution of roots allowed vascular plants to adapt to land environments. Fossil
evidence indicates that roots evolved independently in euphyllophytes (ferns and seed …

A near complete genome assembly of the East Friesian sheep genome

X You, Q Fang, C Chen, J Cao, S Fu, T Zhang, S Wang… - Scientific Data, 2024 - nature.com
Advancements in sequencing have enabled the assembly of numerous sheep genomes,
significantly advancing our understanding of the link between genetic variation and …

Large-scale snake genome analyses provide insights into vertebrate development

C Peng, DD Wu, JL Ren, ZL Peng, Z Ma, W Wu, Y Lv… - Cell, 2023 - cell.com
Snakes are a remarkable squamate lineage with unique morphological adaptations,
especially those related to the evolution of vertebrate skeletons, organs, and sensory …

Chromosome-level genome assembly of the flower thrips Frankliniella intonsa

Z Zhang, J Bao, Q Chen, J He, X Li, J Zhang, Z Liu… - Scientific Data, 2023 - nature.com
As an economically important insect pest, the flower thrips Frankliniella intonsa (Trybom)
causes great damage to host plants by directly feeding and indirectly transmitting various …