Alternative ORFs and small ORFs: shedding light on the dark proteome

MW Orr, Y Mao, G Storz, SB Qian - Nucleic acids research, 2020 - academic.oup.com
Traditional annotation of protein-encoding genes relied on assumptions, such as one open
reading frame (ORF) encodes one protein and minimal lengths for translated proteins. With …

The macrolide antibiotic renaissance

GP Dinos - British journal of pharmacology, 2017 - Wiley Online Library
Macrolides represent a large family of protein synthesis inhibitors of great clinical interest
due to their applicability to human medicine. Macrolides are composed of a macrocyclic …

The SecM arrest peptide traps a pre-peptide bond formation state of the ribosome

F Gersteuer, M Morici, S Gabrielli, K Fujiwara… - nature …, 2024 - nature.com
Nascent polypeptide chains can induce translational stalling to regulate gene expression.
This is exemplified by the E. coli secretion monitor (SecM) arrest peptide that induces …

Genome-wide survey of ribosome collision

P Han, Y Shichino, T Schneider-Poetsch, M Mito… - Cell Reports, 2020 - cell.com
Ribosome movement is not always smooth and is rather often impeded. For ribosome
pauses, fundamental issues remain to be addressed, including where ribosomes pause on …

Mechanisms of cotranslational maturation of newly synthesized proteins

G Kramer, A Shiber, B Bukau - Annual review of biochemistry, 2019 - annualreviews.org
The timely production of functional proteins is of critical importance for the biological activity
of cells. To reach the functional state, newly synthesized polypeptides have to become …

A short translational ramp determines the efficiency of protein synthesis

M Verma, J Choi, KA Cottrell, Z Lavagnino… - Nature …, 2019 - nature.com
Translation initiation is a major rate-limiting step for protein synthesis. However, recent
studies strongly suggest that the efficiency of protein synthesis is additionally regulated by …

The ribosome in action: Tuning of translational efficiency and protein folding

MV Rodnina - Protein Science, 2016 - Wiley Online Library
Marina V. Rodnina is the winner of the 2015 Hans Neurath Award. Abstract The cellular
proteome is shaped by the combined activities of the gene expression and quality control …

Nature and regulation of protein folding on the ribosome

CA Waudby, CM Dobson, J Christodoulou - Trends in biochemical …, 2019 - cell.com
Co-translational protein folding is an essential process by which cells ensure the safe and
efficient production and assembly of new proteins in their functional native states following …

Rock, scissors, paper: How RNA structure informs function

SM Assmann, HL Chou, PC Bevilacqua - The Plant Cell, 2023 - academic.oup.com
RNA can fold back on itself to adopt a wide range of structures. These range from relatively
simple hairpins to intricate 3D folds and can be accompanied by regulatory interactions with …

RQT complex dissociates ribosomes collided on endogenous RQC substrate SDD1

Y Matsuo, P Tesina, S Nakajima, M Mizuno… - Nature structural & …, 2020 - nature.com
Ribosome-associated quality control (RQC) represents a rescue pathway in eukaryotic cells
that is triggered upon translational stalling. Collided ribosomes are recognized for …