An overview of recent advances in structural bioinformatics of protein–protein interactions and a guide to their principles
G Sudha, R Nussinov, N Srinivasan - Progress in biophysics and molecular …, 2014 - Elsevier
Rich data bearing on the structural and evolutionary principles of protein–protein
interactions are paving the way to a better understanding of the regulation of function in the …
interactions are paving the way to a better understanding of the regulation of function in the …
CryptoSite: expanding the druggable proteome by characterization and prediction of cryptic binding sites
P Cimermancic, P Weinkam, TJ Rettenmaier… - Journal of molecular …, 2016 - Elsevier
Many proteins have small-molecule binding pockets that are not easily detectable in the
ligand-free structures. These cryptic sites require a conformational change to become …
ligand-free structures. These cryptic sites require a conformational change to become …
Computational and biochemical characterization of two partially overlapping interfaces and multiple weak-affinity K-Ras dimers
P Prakash, A Sayyed-Ahmad, KJ Cho, DM Dolino… - Scientific reports, 2017 - nature.com
Recent studies found that membrane-bound K-Ras dimers are important for biological
function. However, the structure and thermodynamic stability of these complexes remained …
function. However, the structure and thermodynamic stability of these complexes remained …
Specificity and stability of transient protein–protein interactions
Highlights•Specificity and stability are two major determinants of protein recognition in
transient protein–protein complexes (tPPCs).•Some interface residues of tPPCs are rigid in …
transient protein–protein complexes (tPPCs).•Some interface residues of tPPCs are rigid in …
Deciphering Isoniazid Drug Resistance Mechanisms on Dimeric Mycobacterium tuberculosis KatG via Post-molecular Dynamics Analyses Including Combined …
Resistance mutations in Mycobacterium tuberculosis (Mtb) catalase peroxidase protein
(KatG), an essential enzyme in isoniazid (INH) activation, reduce the sensitivity of Mtb to first …
(KatG), an essential enzyme in isoniazid (INH) activation, reduce the sensitivity of Mtb to first …
Structural and dynamics aspects of ASC speck assembly
Activation of the inflammasome is accompanied by rapid formation of a micrometer-sized
perinuclear structure called the ASC speck, a platform for caspase-1 activity. The ASC speck …
perinuclear structure called the ASC speck, a platform for caspase-1 activity. The ASC speck …
Learning protein binding affinity using privileged information
Background Determining protein-protein interactions and their binding affinity are important
in understanding cellular biological processes, discovery and design of novel therapeutics …
in understanding cellular biological processes, discovery and design of novel therapeutics …
Protein–protein interaction interfaces and their functional implications
G Schreiber - 2020 - books.rsc.org
Proteins are extremely heterogenous molecules, which allows them to execute such a large
variety of biological functions. Proteins have structural roles, perform chemical catalysis and …
variety of biological functions. Proteins have structural roles, perform chemical catalysis and …
Interface residues of transient protein-protein complexes have extensive intra-protein interactions apart from inter-protein interactions
S Jayashree, P Murugavel, R Sowdhamini… - Biology direct, 2019 - Springer
Background Protein-protein interactions are crucial for normal biological processes and to
regulate cellular reactions that affect gene expression and function. Several previous studies …
regulate cellular reactions that affect gene expression and function. Several previous studies …
Tertiary structure-based prediction of conformational B-cell epitopes through B factors
Motivation: B-cell epitope is a small area on the surface of an antigen that binds to an
antibody. Accurately locating epitopes is of critical importance for vaccine development …
antibody. Accurately locating epitopes is of critical importance for vaccine development …